Leginon

If you were doing this yesterday, our internet connection to the outside world was down for institutional-wide maintenance. Regarding the root password, thanks for pointing that out. we will change that.

Hi, Anchi,

Thanks for very prompt reply.
It is not accessible today, now, as I test.
http://emg.nysbc.org/git/ is available but prompts for password. So the repo is not readable.

Thanks

Wei

Did you try to access the address with webbrowser ? That was not the intention. git cloning does not requires password. Pushing commit requires it. The autoinstall script is meant to be run from command line.

Try

git clone -b trunk http://emg.nysbc.org/git/myami your_local_directory

If it still ask for password, this system you use has a local git configuration that impose that not from our side. I just tried it.

I think my (institution) IP is blocked.

$ git clone -b trunk http://emg.nysbc.org/git/myami myami
Cloning into 'myami'...
fatal: unable to access 'http://emg.nysbc.org/git/myami/': Recv failure: Connection reset by peer

Do you have a blacklist on that server?

I've just tried from my home computer and it works. We don't have a blacklist on that server. It might be your institution networking as it was the case in this stackoverflow - https://stackoverflow.com/questions/24484327/git-clone-error-read-from-socket-failed-connection-reset-by-peer-fatal-could

OK. Figured out that I have to use https instead of http on this server. This is probably some network security on my end. Thanks all for your help.

My diff from this thread.

1. Probably https is better than http.
2. use getpass instead of raw_input.

 import hashlib
+import getpass

 class CentosInstallation(object):

     def setReleaseDependantValues(self):
         # need to change to branch when release
-        self.gitCmd = "git clone -b trunk http://emg.nysbc.org/git/myami " + self.gitMyamiDir
+        self.gitCmd = "git clone -b trunk https://emg.nysbc.org/git/myami " + self.gitMyamiDir
         # redhat release related values
         self.torqueLibPath = '/var/lib/torque/'

@@ -1230,7 +1231,7 @@
         self.adminEmail   = value

         # Set the root password        
-        password              = raw_input("Please enter the system root password: ")
+        password              = getpass.getpass("Please enter the system root password: ")
         password              = password.strip()
         self.serverRootPass   = password

##################
Other places use clear text passwords. Maybe you can fix it.

   1328                 setupURL = "http://localhost/myamiweb/setup/autoInstallSetup.php?password=" + self.serverRootPass + "&myamidir=" + self.leginon_app_rootdir + "&appv=%d        " % app_version + "&uploadsample=" + "%d" % int(self.doDownloadSampleImages)
   1329                 myamiwebOpened = None
   1330                 # To get the included path correctly in php command, we need to cd to where the file is.
   1331                 cmd = "php autoInstallSetup.php --password %s --myamidir %s --appv %d --uploadsample %d" % (self.serverRootPass, self.leginon_app_rootdir, app_version,         int(self.doDownloadSampleImages))

Thanks for pointing this out and suggest solutions. Created Issue #8309 to fix this. We have also converted all references to https in the documentation. Hopefully nothing is missed.