Leginon stops with "KeyError: u" in SetupWizard.py
Added by Anonymous almost 17 years ago
Hi,
I've so far installed Leginon 1.4.1 and all prerequisites. wxPython is installed from sources and http://emg.nysbc.org/bb/viewtopic.php?t=230 helped to solve the libCV problem. However, now when starting Leginon I am presented an almost uniformly grey window (with a white bar on the left side) and the following Python errors are issued:
[root@pc-polara1 numarray-1.5.2]# start-leginon.py This is a fake libCV Traceback (most recent call last): File "/usr/bin/start-leginon.py", line 10, in ? start.start(legoptparse.options) File "/usr/lib/python2.4/site-packages/Leginon/start.py", line 21, in start m = gui.wx.Manager.App(None, options=options) File "/usr/lib/python2.4/site-packages/Leginon/gui/wx/Manager.py", line 110, in __init__ wx.App.__init__(self) File "/usr/lib64/python2.4/site-packages/wx-2.8-gtk2-unicode/wx/_core.py", line 7836, in __init__ self._BootstrapApp() File "/usr/lib64/python2.4/site-packages/wx-2.8-gtk2-unicode/wx/_core.py", line 7433, in _BootstrapApp return _core_.PyApp__BootstrapApp(*args, **kwargs) File "/usr/lib/python2.4/site-packages/Leginon/gui/wx/Manager.py", line 146, in OnInit setup = gui.wx.SetupWizard.SetupWizard(self.manager) File "/usr/lib/python2.4/site-packages/Leginon/gui/wx/SetupWizard.py", line 599, in __init__ self.userpage.setUsers(users) File "/usr/lib/python2.4/site-packages/Leginon/gui/wx/SetupWizard.py", line 89, in setUsers self.setUserSelection() File "/usr/lib/python2.4/site-packages/Leginon/gui/wx/SetupWizard.py", line 82, in setUserSelection self.onUserChoice() File "/usr/lib/python2.4/site-packages/Leginon/gui/wx/SetupWizard.py", line 109, in onUserChoice session = parent.sessionselectpage.getSelectedSession() File "/usr/lib/python2.4/site-packages/Leginon/gui/wx/SetupWizard.py", line 325, in getSelectedSession return self.GetParent().userpage.sessions[name] KeyError: u''
This can only stopped with ^C.
Any ideas, where this error message could be related to?
Thanks
frank
Replies (5)
- Added by Anonymous almost 17 years ago
Nobody has an idea? Do you need more infos from me? Please let me know. I'm stuck.
frank
- Added by Jim Pulokas over 16 years ago
Frank,
This bug has been fixed in our development version, which should become an official release very soon. Until then, I am providing some snapshots from our CVS repository:
http://www.scripps.edu/~pulokas/leginon/Download the latest (2008-02-22, zip or tgz). This contains the latest leginon, sinedon, pyami, and ImageViewer. I recommend installing each of them over your current installation using
python setup.py install
That should fix the problem, and maybe some others that you have not encountered yet.
Let me know if that works.
Jim
- Added by Anonymous over 16 years ago
Hi Jim,
http://www.scripps.edu/~pulokas/leginon/"pulokas" wrote: Frank,
This bug has been fixed in our development version, [...]
Download the latest (2008-02-22, zip or tgz). This contains the latest leginon, sinedon, pyami, and ImageViewer. I recommend installing each of them over your current installation using
python setup.py install
That should fix the problem, and maybe some others that you have not encountered yet.
Let me know if that works.
Jim
The error message is now different:
[root@pc-polara1 ~]# start-leginon.py This is a fake libCV libCV found Traceback (most recent call last): File "/usr/bin/start-leginon.py", line 9, in ? import start File "/usr/lib/python2.4/site-packages/Leginon/start.py", line 12, in ? import gui.wx.Manager File "/usr/lib/python2.4/site-packages/Leginon/gui/wx/Manager.py", line 16, in ? import manager File "/usr/lib/python2.4/site-packages/Leginon/manager.py", line 18, in ? import launcher File "/usr/lib/python2.4/site-packages/Leginon/launcher.py", line 14, in ? import nodeclassreg File "/usr/lib/python2.4/site-packages/Leginon/nodeclassreg.py", line 122, in ? registerNodeClasses() File "/usr/lib/python2.4/site-packages/Leginon/nodeclassreg.py", line 120, in registerNodeClasses registerNodeClass(modulename, classname, sortclass, package) File "/usr/lib/python2.4/site-packages/Leginon/nodeclassreg.py", line 57, in registerNodeClass mod = imp.load_module(impname, *modinfo) File "/usr/lib/python2.4/site-packages/Leginon/robotatlastargetfinder.py", line 24, in ? import project File "/usr/lib/python2.4/site-packages/Leginon/project.py", line 9, in ? dbparams = { AttributeError: 'module' object has no attribute 'projectdb' [root@pc-polara1 ~]#
I am also irritated by the "libCV found" at the beginning. I thought I got rid of this...
frank
- Added by Jim Pulokas over 16 years ago
It looks like something did not get updated to the latest version (2008-02-22). Can you check the modification times of the files in /usr/lib/python2.4/site-packages/Leginon/. This error would be caused if project.py got updated, but leginonconfig.py did not. Maybe the "python setup.py install" did not work right. If that is the case, It may help to move /usr/lib/python2.4/site-packages/Leginon/ to a back up location and do a fresh install of leginon from the 2008-02-22 release.
Regarding the libcv message, the fake libCV.py module that is currently installed is no longer necessary to make leginon happy. In the latest version of Leginon, it will not crash if libCV is missing, so you can remove the fake one.
Jim
- Added by Anonymous over 16 years ago
"pulokas" wrote: It looks like something did not get updated to the latest version (2008-02-22). [...] Maybe the "python setup.py install" did not work right. If that is the case, It may help to move /usr/lib/python2.4/site-packages/Leginon/ to a back up location and do a fresh install of leginon from the 2008-02-22 release.
[...]
Great. I did as instructed (reinstalled Leginon from the 2008-02-22 release) and now start-leginon.py starts up w/o error message. Since I am not the one that knows how to use Leginon, I'll let you know as soon as I have the final OK from the user.
frank