Feature #13968: Add option to use whole micrograph for ALS ice thickness calculation - Leginon - Electron Microscopy Group

Actions

Feature #13968

closed

Add option to use whole micrograph for ALS ice thickness calculation

Added by William Rice about 2 years ago. Updated 11 months ago.

Status:

Closed

Priority:

Normal

Assignee:

-

Category:

-

Target version:

Appion/Leginon 3.7

Start date:

12/07/2022

Due date:

% Done:

0%

Estimated time:

Deliverable:

Description

in Leginon 3.6, a change was made to divide the image into 4 areas and choose the highest intensity area for the thickness
this was to avoid gold areas since they will throw off the thickness calculation
this change adds the option to use the entire micrograph for cases where gold clipping will not be a problem

Actions

#1

Updated by William Rice about 2 years ago

code submitted 12.7.22

Actions

#2

Updated by Anchi Cheng almost 2 years ago

Status changed from New to In Code Review

After discussing with Bill, we decide to revert to the old behavior with entire image as default. use best quadrant stats becomes an option.

I made the change to 00477563d in myami-3.6 branch. I will cherry pick it and the original back to trunk.

Bill, please review and let me know if this looks good.

Actions

#3

Updated by William Rice almost 2 years ago

Looks good to me

Actions

#4

Updated by Anchi Cheng 11 months ago

Status changed from In Code Review to Closed

Actions

Also available in: Atom PDF