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Feature #2126

closed

view DE rawframe tiff image in TargetPanel.py for debugging purpose

Added by Anchi Cheng over 11 years ago. Updated over 10 years ago.

Status:
Closed
Priority:
Normal
Assignee:
Jim Pulokas
Category:
-
Target version:
myami-3.0
Start date:
10/31/2012
Due date:
% Done:

0%

Estimated time:
Deliverable:

Description

TargetPanel.py in Leignon gui/wx can be run stand alone for displaying mrc, jpeg, and tiff file. Since the tiff reader in PIL does not work right with the tiff file from Direct Electron DE-series raw images, tifffile.py need to be used here.

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 #1

Updated by Anchi Cheng over 11 years ago

  • Status changed from New to In Code Review
  • Assignee changed from Anchi Cheng to Jim Pulokas

r17222 detects *.tif and use tifffile.py. Also switch to use numpil.py for jpeg etc.

Note that there is a flip applied to the array read from tiff file so that it has the same reading order as the mrc file taken through Leginon.

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 #2

Updated by Anchi Cheng over 10 years ago

  • Status changed from In Code Review to Closed

no one to review it.

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 #3

Updated by Anchi Cheng over 10 years ago

  • Target version set to myami-3.0
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