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Bug #2918

closed

corrected integrated image returned to Leginon has different mean from the raw when exposure time is low

Added by Anchi Cheng about 10 years ago. Updated almost 7 years ago.

Status:
Closed
Priority:
Normal
Assignee:
Category:
-
Start date:
09/03/2014
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 3.0.0
Show in known bugs:
No
Workaround:

Description

Reported by Liguo Wang

This bug also affects images with large area of dark region such as images of a grid square. The grid bar region appears speckled as some pixels have much higher intensity than what is expected of a dark region

Actions #1

Updated by Anchi Cheng about 10 years ago

  • Status changed from New to In Test
  • Assignee set to Liguo Wang

This is a GatanK2 specific bug. It was introduced when the early GMS 2.3 version failed system correction when image was rotated or flipped.

r18556 fix this in trunk
r18557 fix this in 3.0
r18558 fix this in 3.1

This bug affects the integrated image but not normalization of the frames in appion since apDDprocess.py does not use this.

Liguo, please let me know if this fixes the problem.

Actions #2

Updated by Anchi Cheng almost 7 years ago

  • Status changed from In Test to Closed
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