Support #4817
openScipy 0.12 in Leginon
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Updated by Anchi Cheng over 7 years ago
- Affected Version changed from Appion/Leginon 3.2 to Appion/Leginon 3.3
Updated by Anchi Cheng over 7 years ago
- Project changed from Appion to Leginon
- Category deleted (
Installation) - Assignee changed from Sargis Dallakyan to Carl Negro
This is needed for Neil's Lacey Holefinder application in Leginon. We will try to install this on krios3leginon and push it to the autoinstaller if it works properly.
Updated by Neil Voss over 7 years ago
I do not like to force everyone to manually update their scipy, especially since it could cause breaks in other unexpected places. I say we wait for CentOS7 requirement.
I did not start implementing the focus, because I immediately recognized that scipy was too old and did not start.
Updated by Anchi Cheng over 7 years ago
- Subject changed from Scipy 0.12 RPM to Scipy 0.12 in Leginon
I abandoned the idea of installing scipy 0.12 through rpm because the rpm we found requires python2.7. I installed it with the following steps:
To be safe:
sudo yum install python-devel python-nose python-setuptools gcc gcc-gfortran gcc-c++ blas-devel lapack-devel atlas-devel
Then:
sudo yum remove numpy
sudo yum install python-pip
sudo pip install numpy==1.5.1
sudo pip install scipy==0.12