FEI TecnaiTitan installation specifics » History » Version 17
Anchi Cheng, 03/13/2017 04:35 PM
1 | 17 | Anchi Cheng | h1. FEI Tecnai Titan Arctica installation specifics |
---|---|---|---|
2 | 1 | Anchi Cheng | |
3 | 15 | Anchi Cheng | h2. Install win32 version of python subpackages |
4 | 1 | Anchi Cheng | |
5 | 15 | Anchi Cheng | Because all interaction with the scope uses COM interface that is only accessible through 32-bit architecture, python running Leginon component is the 32-bit version. Use the 32-bit Windows files (those marked as win32 and certainly not the ones says 64) in http://emg.nysbc.org/projects/leginon/files for these. |
6 | |||
7 | *Talos has a 64-bit Python pre-installed unde default python location C:\Python27. Therefore, we need to name our installation with another name, such as C:\Python27-win32.* |
||
8 | |||
9 | Here is the full list |
||
10 | {{include(Windows_32_External_Package_Installers_Common)}} |
||
11 | 12 | Anchi Cheng | {{include(Comtypes_installer)}} |
12 | 1 | Anchi Cheng | |
13 | 15 | Anchi Cheng | h2. Required scripting from FEI |
14 | |||
15 | 1 | Anchi Cheng | |TEM Scripting or Tecnai Scripting|Request this when purchasing the microscope|Required| |
16 | |TomMoniker Scripting|Should come with TEM Scripting|Required| |
||
17 | |Low Dose Server Library|Should come with the microscope if low dose kit was purchased|Required only if you want to use low dose kit with Leginon's Manual Application| |
||
18 | 2 | Anchi Cheng | |
19 | 13 | Anchi Cheng | h3. Run checkcom.py |
20 | 2 | Anchi Cheng | |
21 | * From a command line window: |
||
22 | <pre>cd C:\python27\Lib\site-packages\pyscope |
||
23 | 14 | Anchi Cheng | C:\python27\python.exe checkcom.py</pre> |
24 | 2 | Anchi Cheng | |
25 | 13 | Anchi Cheng | * The output should at least find typelib for |
26 | 2 | Anchi Cheng | <pre> |
27 | 13 | Anchi Cheng | TEM Scripting |
28 | 2 | Anchi Cheng | </pre> |
29 | 13 | Anchi Cheng | and |
30 | 10 | Anchi Cheng | <pre> |
31 | 13 | Anchi Cheng | TOM Moniker |
32 | 2 | Anchi Cheng | </pre> |
33 | |||
34 | h2. instruments.cfg |
||
35 | |||
36 | 7 | Anchi Cheng | cs is *constant for sperical abberation* |
37 | |||
38 | For Tecnai series: |
||
39 | 2 | Anchi Cheng | <pre> |
40 | [TEM] |
||
41 | class: tecnai.Tecnai |
||
42 | cs: 2.0e-3 |
||
43 | 1 | Anchi Cheng | </pre> |
44 | |||
45 | 7 | Anchi Cheng | For Titan: |
46 | <pre> |
||
47 | [TEM] |
||
48 | class: tecnai.Tecnai |
||
49 | cs: 2.7e-3 |
||
50 | </pre> |
||
51 | 1 | Anchi Cheng | |
52 | 7 | Anchi Cheng | For Krios (different compustage) |
53 | <pre> |
||
54 | [TEM] |
||
55 | class: tecnai.Krios |
||
56 | cs: 2.7e-3 |
||
57 | </pre> |
||
58 | 1 | Anchi Cheng | |
59 | 16 | Anchi Cheng | For Krios EF mode, treated as a separate instrument. i.e. add |
60 | <pre> |
||
61 | [TEM] |
||
62 | class: tecnai.EFKrios |
||
63 | cs: 2.7e-3 |
||
64 | </pre> |
||
65 | |||
66 | 1 | Anchi Cheng | h2. Testing with pyscope |
67 | 2 | Anchi Cheng | |
68 | 15 | Anchi Cheng | For Tecnai series In python command |
69 | 8 | Anchi Cheng | <pre> |
70 | 1 | Anchi Cheng | from pyscope import tecnai |
71 | 7 | Anchi Cheng | t = tecnai.Tecnai() |
72 | 1 | Anchi Cheng | t.getMagnification() |
73 | 7 | Anchi Cheng | </pre> |
74 | 15 | Anchi Cheng | |
75 | 1 | Anchi Cheng | For Krios |
76 | <pre> |
||
77 | from pyscope import tecnai |
||
78 | 15 | Anchi Cheng | t = tecnai.Krios() |
79 | t.getMagnification() |
||
80 | </pre> |
||
81 | |||
82 | For Krios with EF-TEM mode, add also |
||
83 | <pre> |
||
84 | from pyscope import tecnai |
||
85 | t = tecnai.EFKrios() |
||
86 | 2 | Anchi Cheng | t.getMagnification() |
87 | </pre> |
||
88 | |||
89 | 6 | Anchi Cheng | You should get the current magnification at the microscope when the main viewing screen is up |
90 | 5 | Anchi Cheng | |
91 | 11 | Anchi Cheng | h2. Trouble Shooting |
92 | |||
93 | [[unable to initializ Tecnai interface error]] |
||
94 | |||
95 | 5 | Anchi Cheng | h2. Programs to open before Leginon Client: None |