FEI TecnaiTitan installation specifics » History » Version 8
Anchi Cheng, 07/29/2014 09:06 PM
1 | 1 | Anchi Cheng | h1. FEI TecnaiTitan installation specifics |
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3 | 2 | Anchi Cheng | h2. Extra Package and Installation |
4 | 1 | Anchi Cheng | |
5 | |TEM Scripting or Tecnai Scripting|Request this when purchasing the microscope|Required| |
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6 | |TomMoniker Scripting|Should come with TEM Scripting|Required| |
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7 | |Low Dose Server Library|Should come with the microscope if low dose kit was purchased|Required only if you want to use low dose kit with Leginon's Manual Application| |
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8 | 2 | Anchi Cheng | |
9 | h3. Run updatecom.py |
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11 | * From a command line window: |
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12 | <pre>cd C:\python27\Lib\site-packages\pyscope |
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13 | C:\python27\python.exe updatecom.py</pre> |
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15 | * The output sould contain |
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16 | <pre> |
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17 | initializing TOM Moniker done. |
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18 | </pre> |
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19 | and EITHER ONE of these outputs. The other one would get an error which you can ignore. |
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20 | <pre> |
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21 | initializing TEM Scripting done. |
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22 | initializing Tecnai Scripting done. |
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23 | </pre> |
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24 | |||
25 | h2. instruments.cfg |
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27 | 7 | Anchi Cheng | cs is *constant for sperical abberation* |
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29 | For Tecnai series: |
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30 | 2 | Anchi Cheng | <pre> |
31 | [TEM] |
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32 | class: tecnai.Tecnai |
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33 | cs: 2.0e-3 |
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34 | 1 | Anchi Cheng | </pre> |
35 | |||
36 | 7 | Anchi Cheng | For Titan: |
37 | <pre> |
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38 | [TEM] |
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39 | class: tecnai.Tecnai |
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40 | cs: 2.7e-3 |
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41 | </pre> |
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42 | 1 | Anchi Cheng | |
43 | 7 | Anchi Cheng | For Krios (different compustage) |
44 | For Titan: |
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45 | <pre> |
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46 | [TEM] |
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47 | class: tecnai.Krios |
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48 | cs: 2.7e-3 |
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49 | </pre> |
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50 | |||
51 | 2 | Anchi Cheng | h2. Testing with pyscope |
52 | 3 | Anchi Cheng | |
53 | 2 | Anchi Cheng | In python command |
54 | <pre> |
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55 | 8 | Anchi Cheng | from pyscope import tecnai |
56 | 1 | Anchi Cheng | t = tecnai.Tecnai() |
57 | 7 | Anchi Cheng | t.getMagnification() |
58 | </pre> |
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59 | |||
60 | or for Krios |
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61 | <pre> |
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62 | 8 | Anchi Cheng | from pyscope import tecnai |
63 | 7 | Anchi Cheng | t = tecnai.Krios() |
64 | 2 | Anchi Cheng | t.getMagnification() |
65 | </pre> |
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67 | 6 | Anchi Cheng | You should get the current magnification at the microscope when the main viewing screen is up |
68 | 5 | Anchi Cheng | |
69 | h2. Programs to open before Leginon Client: None |