Getting Started as a Super User¶

Full (Super User) Manual - Getting Started¶

These steps are a general overview of the entire procedure involving
installation, microscope alignment, calibrations, and using Leginon applications (e.g.
Manual, Calibrations, MSI).

1. Download Leginon System¶

http://www.leginon.org/

2. Install Leginon System¶

Refer to the <link linkend="completeinstall">Complete Installation</link>

3. Add Users, Groups, Instruments, Calibrations, and Applications¶

Refer to <link linkend="addusers">Administration</link>

For advanced Leginon users who would like to create an application, see the <link
linkend="createapp">application creation chapter</link>.

4. Test run¶

Refer to <link linkend="runleg_chapter">Start Leginon</link> chapter for test run on
the microscope and on a remote computer.

5. Align the microscope¶

Refer to <link linkend="microscope_setup">Microscope Set-up</link>

6. Calibrate Leginon for the microscope¶

Refer to the <link linkend="calapp_chapter">Calibrations chapter</link>

7. Set-up and Run MSI¶

Refer to <link linkend="MISQuickStart">MSI quick set-up checklist</link>

AND

Refer to <link linkend="leg1operation">MSI Operation</link>

8. Help yourself and others¶

Refer to <link linkend="Inst_troubleshooting">Installation Trouble Shooting</link>,
<link linkend="MSI_troubleshooting">User Trouble Shooting</link> and Leginon Bulletin Board .

9. Know the details¶

For advanced Leginon users who would like to create an application, see the <link
linkend="createapp">application creation chapter</link>.

Refer to <link linkend="Nodes">Node Description</link>

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