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Getting Started as a Super User » History » Revision 3

Revision 2 (Amber Herold, 04/27/2010 04:14 PM) → Revision 3/8 (Amber Herold, 04/27/2010 04:26 PM)

h1. Getting Started as a Super User 




 

 h2. Full (Super User) Manual - Getting Started 



 These steps are a general overview of the entire procedure involving 
 installation, microscope alignment, calibrations, and using Leginon applications (e.g. 
 Manual, Calibrations, MSI). 




 h3. 1. Download the Leginon System 


 "http://www.leginon.org/":http://www.leginon.org/ 





 h3. 2. Install the Leginon System 



 Refer to the [[Complete Installation]]. <link linkend="completeinstall">Complete Installation</link> 





 h3. 3. Add Users, Groups, Instruments, Calibrations, and Applications 



 Refer to [[Administration]] <link linkend="addusers">Administration</link> 


 For advanced Leginon users who would like to create an application, see the chapter entitled [[Create and Edit Applications]]. <link 
 linkend="createapp">application creation chapter</link>. 





 h3. 4. Test run 



 Refer to the [[Start Leginon]] <link linkend="runleg_chapter">Start Leginon</link> chapter for test run instructions on 
 the microscope and on a remote computer. 





 h3. 5. Align the microscope 



 Refer to [[Microscope Set-up]]. <link linkend="microscope_setup">Microscope Set-up</link> 





 h3. 6. Calibrate Leginon for the microscope 



 Refer to the [[Leginon "Calibrations" Application]] chapter. <link linkend="calapp_chapter">Calibrations chapter</link> 





 h3. 7. Set-up and Run MSI 



 Refer to [[MSI Quick-start]]. <link linkend="MISQuickStart">MSI quick set-up checklist</link> 


 AND 


 Refer to [[MSI Operation]] <link linkend="leg1operation">MSI Operation</link> 





 h3. 8. Help yourself and others 



 Refer to [[Installation <link linkend="Inst_troubleshooting">Installation Trouble Shooting]], Shooting</link>, 
 [[Trouble Shooting]] <link linkend="MSI_troubleshooting">User Trouble Shooting</link> and the Leginon    "Bulletin Board":http://emg.nysbc.org/bb/viewforum.php?f=2 . 




 







 h3. 9. Know the details 



 For advanced Leginon users who would like to create an application, see [[Create and Edit Applications]]. the <link 
 linkend="createapp">application creation chapter</link>. 


 Refer to [[Node Descriptions]]. <link linkend="Nodes">Node Description</link> 





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 [[Getting Started as a System Administrator|Getting Started as a System Administrator >]] 

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