Leginon

h1. How does Leginon Name the Files

Leginon image files are typically named

09mar16a_atlas1_00005gr_00003sq_00001hl_v1_00002en.mrc

This name includes

* sessionname: 09mar16a

* grid atlas label: atlas1

* target number in the target list: 00005; 00003; 00001; 00002

* presetname with which the image is aquired: gr; sq; hl; en

* target version: v1

Since Leginon always defines target on an image, and an image is acquired at the

location of the target offsets from the parent image of the target, a family tree is

estabilished. The filename therefore carries this family tree of the multi-scaled imaging.

* Grid atlas label is always unique in the session. When robotic grid

insertion/extration or Grid Entry node class is used for large-scale

screening, the atlas label is replaced by the grid label, unique within the

project, and the insertion number.

* Each target in the target list an Acquisition node class or subclass

receives has a unique number. Ocassionally a target in the list is out of

range of the goniometer or is aborted for various reasons before acquired.

The filename will therefore skip the number.

* When drift is declared, a new version of the target is obtained through

the node of TransformManager class, therefore the image acquired using that

target carries the version number to distinguish it from the

original.