How to Update from v30 (Instrument Windows Computer) » History » Revision 7
Revision 6 (Anchi Cheng, 08/13/2014 01:10 PM) → Revision 7/8 (Anchi Cheng, 08/13/2014 01:11 PM)
h1. How to Update from v30 (Instrument Windows Computer) The changes to v3.1 DOES require upgrade at the microscope and camera computers. See [[Installation Troubleshooting]] and "Leginon Bulletin Board":http://emg.nysbc.org/projects/leginon/boards searching for "install" if you run into problems. h2. Download myami-3.1 source code h3. Check out SVN Source Files from the repository Assuming that you have installed some kind of svn client such as TortoiseSVN "http://tortoisesvn.tigris.org/", you can use your mouse to do the following * Create myami3.1 directory somewhere at your convenience * Change directory into myami3.1 * Right-click the mouse botton in this directory window and select Tortoise svn Checkout in the menu: !http://emg.nysbc.org/software/leginon/images/images/svnmenu.png! * Set up svn checkout window like this, but check out from http://emg.nysbc.org/svn/myami/branches/myami-2.2 and save it to myami2.2 folder !http://emg.nysbc.org/software/leginon/images/images/svnco.png! Otherwise, you can copy the files from your linux myami-3.1 source. h2. Move your existing packages to a backup directory (Optional): At the beginning of the syscheck.py output, the location of the exisiting Leginon folder is shown. Although new installation overwrite the old in most cases, problem has been observed in the past. Therefore, it is best to remove the old files from the path before new installation. Better yet, copy into a backup folder because we need some configuration files from them. You may find these folders here: |leginon| |pyscope| |sinedon| |pyami| For example, your installed Leginon folder is at C:\\python27\Lib\site-packages\leginon <pre>Go to C\\python27\site-packages Create Leginon3_0_backup folder Move Leginon folder into Leginon3_0_backup folder</pre> h2. Install subpackages you downloaded from NRAMM svn repository. *You should not install numextension, libcv and comarray using this instruction* * Start a command line Window from Start Menu * Reinstall the package in EACH of the following folders using the included setup.py |leginon| |pyscope| |sinedon| |pyami| <pre>cd Your_Download_Place\myami3.1_folder c:\\python27\python.exe setup.py install</pre> {{include(locate global config directory on Windows)}} h2. copy the old config files to the global location if you still use local files {{include(locate global config directory on Windows)}} h2. Enter Tietz PXL camera imaging size in instruments.cfg if needed in this format: <pre> [camera] tietz.TietzPXL zplane:10 height: 2048 width: 2048 </pre> h2. About [[TEM Scripting Beam Tilt Calibration]] * If you have done [[TEM_Scripting Beam Tilt Calibration]] and have changed the scale factor in tecnai.py, you should copy the value to your new installation. h2. Gatan K2 Summit camera Check and modify pyscope/dmsem.py for new configuration needed for the camera to indicate its DM version, orientation, and file saving location. More details in [[Gatan_K2_installation_and_setup#(Version-3.1)-Define-local-configuration]] <pre> # DM Version DM_VERSION = '2.30.542.0' # the value in DM camera config K2_CONFIG_FLIP = True # multiple of 90 degrees (i.e. put 1 if 90 degrees, 3 if 270 degrees) K2_CONFIG_ROTATE = 3 # raw frame base directory. Use '\\' as path separator RAW_FRAME_DIR = 'D:\\frames\\' </pre> ______ [[How_to_Update_from_v30_(Linux)|< How to Update from v3.0 (Linux) ]] ______