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Leginon Homepage » Leginon Manual » Upgrade to Leginon System version 33 from version 32 »

How to Update from v32 (Linux) » History » Version 2

Anchi Cheng, 10/18/2017 08:53 PM

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h1. How to Update from v32 (Linux)
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h1. Upgrade processing server





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h2. Download myami-beta source code





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<pre>





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git clone -b myami-3.3 http://emg.nysbc.org/git/myami myami-3.3





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</pre>





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h2. Install Appion/Leginon Packages





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h3. Install all the myami python packages _except appion_ using the following script:





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<pre>





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cd /your_download_area





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cd myami-3.3





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sudo ./pysetup.sh install





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</pre>





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That will install each package, and report any failures.  To determine the cause of failure, see the generated log file "pysetup.log".  If necessary, you can enter a specific package directory and run the python setup command manually.  For example, if sinedon failed to install, you can try again like this: 





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<pre>





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cd sinedon





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sudo python setup.py install





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</pre>





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h3. Move leginon.cfg/instruments.cfg/sinedon.cfg if it was saved with the old installation.  In general, the installation would have put it in /etc/myami.  Therefore, you do not have to do anything.





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Run this script to find out where it was:





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<pre> 





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cd /your_download_area/myami/leginion/





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./configcheck.py





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</pre>





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If the script can not find leginon.cfg, and you found a copy of leginon.cfg in $PYTHONSITEPKG/leginon/config from the last installation, move that leginon.cfg to $PYTHONSITEPKG/leginon.





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h1. Upgrade web server





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Rename your current myamiweb at the document root of the web server to something else as a backup.





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h2. install the 3.3 version of pyami as it is done on processing server.





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h3. restart redux server





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h2. Install updated Web viewers and tools





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See [[Install the Web Interface]] section in Complete Installation Chapter to put the new myamiweb tools to document root for the web server.  There is no need to run WebToolSetupWizard, however.  See below.





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h2. Copy config.php from your older myamiweb backup to the new myamiweb.





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h2. Import new versions of Leginon Applications





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Old version of MSI Leginon applications will still run but without new feature.  Use the Web administrator tool to import new version as shown in [[Steps_involved_in_the_installation]] Step for "Import Applications".





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______





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[[How_to_Update_from_v32_(Instrument_Windows_Computer)| How to Update from v3.2 (Instrument Computer) >]]