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JEOLCOM installation specifics » History » Revision 12

Revision 11 (Anchi Cheng, 10/06/2014 10:38 PM) → Revision 12/25 (Anchi Cheng, 02/27/2015 01:36 PM)

h1. JEOL installation specifics 

 These implementations have pyscope modules included in our repository 

 h2. JEOL 1230 

 Developed at New York Structure Biology Center 

 Please contact David Stokes 

 h2. JEOL 1400 and 3200 (and other scopes with JEOL's COM library) 

 Developed at Northwestern University by Christian Suloway 

 h3. Install 32-bit version of myami package on the associated camera computer 

 * Instead of installing myami package on JEOL scope-controlling PC, microscope, the access to JEOLCOM usually is only known to work through the computer controlling the digital camera, regardless of the camera manufacturer. 

 * In addition, probably because of the way JEOLCOM works, the installation is limited to 32-bit version. 

 h3. Alternatively, install myami package on JEOL scope-controlling microscope 

 * This is only possible if this PC has TEMExternal3 installed and if it is on the same secured network as Leginon processing and database server. 

 See [[JEOL External3 setup]] 

 {{include(comtypes installer)}} 

 Please check [[Windows_Installation_All]] for important installation instruction regarding comtypes 

 Notes from the developer: 
 <pre> 
 There are a few conversion factor at the top of the file that may need adjustment depending on the microscope. 
 </pre> 

 h2. instruments.cfg 

 [scope] 
 class: jeolcom.Jeol 
 cs: 4.1e-3 

 h2. Testing with pyscope 

 In python command 
 <pre> 
 from pyscope import tecnai 
 t =jeolcom.Jeol() 
 t.getMagnification() 
 </pre> 

 You should get the current magnification at the microscope when the main viewing screen is up