JEOLCOM installation specifics » History » Revision 13
Revision 12 (Anchi Cheng, 02/27/2015 01:36 PM) → Revision 13/25 (Anchi Cheng, 03/06/2015 12:25 AM)
h1. JEOL installation specifics These implementations have pyscope modules included in our repository h2. JEOL 1230 Developed at New York Structure Biology Center Please contact David Stokes h2. JEOL 1400 and 3200 (and other scopes with JEOL's COM library) Developed originally at Northwestern University by Christian Suloway h3. Install 32-bit version of myami package on the associated camera computer * Instead of installing myami package on JEOL scope-controlling PC, the access to JEOLCOM usually work through the computer controlling the digital camera, regardless of the camera manufacturer. * In addition, probably because of the way JEOLCOM works, the installation is limited to 32-bit version. h3. Alternatively, install myami package on JEOL scope-controlling microscope * This is only possible if this PC has TEMExternal3 installed and if it is on the same secured network as Leginon processing and database server. See [[JEOL External3 setup]] {{include(comtypes installer)}} Please check [[Windows_Installation_All]] for important installation instruction regarding comtypes Notes from the developer: <pre> There are a few conversion factor at the top of the file that may need adjustment depending on the microscope. </pre> h2. jeol.cfg jeol.cfg records some instrument specific parameters that are required to convert the COM output to SI units that Leginon depends on as well as standard focus values needed for initializing defocus reference. See [[Setup and Calibration for jeol.cfg]] h2. instruments.cfg [scope] class: jeolcom.Jeol cs: 4.1e-3 h2. Testing with pyscope In python command <pre> from pyscope import tecnai t =jeolcom.Jeol() t.getMagnification() </pre> You should get the current magnification at the microscope when the main viewing screen is up