MSI-Ptolemy API information for developers » History » Revision 3
Revision 2 (Anchi Cheng, 03/15/2022 05:14 PM) → Revision 3/8 (Anchi Cheng, 03/15/2022 05:19 PM)
h1. MSI-Ptolemy API information for developers h2. Square_Finding node: The square finding should operate on each gr image tile at its saved mrc dimension. # Shell script to call and specified in Blobs settings. The script should accept the same parameters and give json output as [[Setup_Ptolemy_CLI_shell_script]] # Output json file is a list of square blob founds by the algorithm. For each item, it requires the following key, value pairs. h3. area: integer > number of pixels the square opening on the gr tile image. h3. center: [float, float] > The coordinate of the square opening center [col, row] with [0,0] at the start of the data block in the mrc image. h3. score: float > The score of the blob as goodness of the blob as a good square. The higher the number the better. h3. brightness: float > Mean intensity value or equivalent in the square blob. This is saved as a part of statistics but not used for filtering. h3. vertices: [[float, float], [float, float], [float, float], .....] > convex-hull vertices used by leginon to determine if a cursor position is within the square blob. Same coordinate system as centers. h2. Example json: <pre> [{"vertices": [[600.4, 304.7], [502.5, 334.8], [532.7, 432.7], [630.5, 402.6]], "center": [566, 368], "area": 10488.9, "brightness": 194.2, "score": 0.3902}, {"vertices": [[464.1, 568.5], [370.0, 597.5], [399.2, 692.5], [493.3, 663.5]], "center": [431, 630], "area": 9785.5, "brightness": 193.7, "score": 0.2530}] </pre>