New User Features 20 » History » Version 8
Anchi Cheng, 08/14/2018 09:42 AM
1 | 2 | Anchi Cheng | h1. New User Features for version 2.0 |
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2 | 1 | Anchi Cheng | |
3 | h2. Graphical User Interface |
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5 | * A basic settings dialog with typical user interacting items is presented to the user first. The complete dialog is available by clicking "Advanced" button in there. |
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7 | 2 | Anchi Cheng | h2. Targeting Accuracy |
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9 | * We have modified the image-shift targeting method so that the accuracy of the targeting improved significantly between parent images at M mode and target images at SA mode. The change is transparent to the user and requires image-shift calibration at both presets used. |
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11 | 1 | Anchi Cheng | h2. Acquisition Node |
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13 | 3 | Anchi Cheng | * Background reading is available for low-magnification, large area rastering. This does not work well with high resolution requirement, but provides a significant speed-up for use with MSI-Section type of application. |
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15 | 3 | Anchi Cheng | * The column valve (and emission turned off, if so chosen) can be automatically closed after target queue is exhausted by clicking the "Toggle Queue Timeout" button once the queue processing has started. |
16 | 2 | Anchi Cheng | |
17 | 3 | Anchi Cheng | * Leginon can send you an e-mail, pause or abort the target list if the image intensity is too high or too low. |
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19 | 3 | Anchi Cheng | * Beam tilt induced by image shift can be corrected if calibration is made (Experimental). |
20 | 2 | Anchi Cheng | |
21 | h2. TargetFinder Node and its subclasses |
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23 | 3 | Anchi Cheng | * Right click on a target while Shift key is pressed down clears all targets of the same selected type. |
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25 | 3 | Anchi Cheng | * Right click anywhere on the image while Shift and Ctrl keys are pressed down clears all targets on the image. |
26 | 2 | Anchi Cheng | |
27 | h2. JAHCFinder Node (used in MSI-T) |
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29 | 3 | Anchi Cheng | * Blobs can be manually selected. |
30 | 2 | Anchi Cheng | |
31 | 3 | Anchi Cheng | * Lattice can be extended to cover the whole image or to a 3x3 pattern, based on two blob selections, first as the center of the extension, second to define the lattice spacing and rotation. |
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33 | 5 | Anchi Cheng | h2. Corrector Node |
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35 | 6 | Anchi Cheng | * Gain correction is now handled by corrector client behind the scene. The normalization and dark images used for each correction is recorded in the database so that it can be decorrected in the future if necessary. |
36 | 5 | Anchi Cheng | |
37 | * Despiking option and parameters are relocated into image plan editing dialog and are set separately for each camera configuration. |
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39 | 2 | Anchi Cheng | h2. Beam Tilt Calibrator Node |
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41 | 3 | Anchi Cheng | * Automated coma-free alignment can be done once calibrated in the same node. |
42 | 2 | Anchi Cheng | |
43 | 8 | Anchi Cheng | h2. [[Beam_Tilt_Imager| Beam Tilt Imager Node]] |
44 | 2 | Anchi Cheng | |
45 | 3 | Anchi Cheng | * Acquiring Zemlin Tableau for coma-free alignment. Manual correction of the beam tilt can be done by interacting with the displayed tableau, too. |
46 | 2 | Anchi Cheng | |
47 | h2. Tomography Node |
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49 | 3 | Anchi Cheng | * optional Saxton scheme of tilt series collection |
50 | 2 | Anchi Cheng | |
51 | 3 | Anchi Cheng | * option for using the last z0 value of the model for initialization. Useful when Tomo Focus node consistently give an offset in z in comparison with the backlash corrected value found through tomography node. |
52 | 2 | Anchi Cheng | |
53 | h2. MSI-Section3step application |
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55 | 3 | Anchi Cheng | * capable of collecting tilt groups as well. |
56 | 1 | Anchi Cheng | |
57 | ______ |
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59 | 4 | Anchi Cheng | [[PyScope Changes 20|< PyScope Changes]] | [[New Web Tool Features 2.0| New Web Tool Features >]] |
60 | 1 | Anchi Cheng | |
61 | ______ |