Ptolemy installation and setup » History » Version 2
Anchi Cheng, 03/15/2022 03:02 PM
| 1 | 1 | Anchi Cheng | h1. Ptolemy installation and setup |
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| 3 | Automated square and hole finders are added to leginon to use Ptolemy (https://arxiv.org/abs/2112.01534) to determine optimal targets using computer vision algorithm and Convolutional Neural Network trained on user target selections accumulated at Simons Electron Microscopy Center at New York Biology Center (SEMC@NYSBC. |
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| 5 | This implementation requires Ptolemy which has a separate license. For this release, the communication is through command line interface and rely on shared file system. |
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| 7 | * At SEMC@NYSBC, Ptolemy, which was tested on python 3.9, runs in anaconda environment on the same CentOS7 computer where the main leginon process is. |
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| 9 | h2. Install Ptolemy and setup shell scripts to use its cli for [[Setup Ptolemy CLI shell script|grid square finding]] and [[Setup Ptolemy CLI for exposure targeting|exposure target hole finding]] |