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Run autoscreenpy » History » Version 1

Anchi Cheng, 03/15/2022 03:38 PM

1 1 Anchi Cheng
h1. Run autoscreen.py
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If you have installed leginon, autoscreen.py is copied to script directory like start-leginon.py.  Otherwise, you will find it under leginon directory.
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<pre>
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autoscreen.py
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</pre>
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It will ask a few questions
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<pre>
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Enter autoloader cassette-grid mapping filename=/Users/acheng/grid.list
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Full workflow or atlas only (full/atlas): full
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Enter an old session name to base new sessions on: 22mar02a
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Enter Z stage height to return to in um (default: the old sessionvalue 0.0): 
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</pre>
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The rest is automated.
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h2. Things it will do for each grid:
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# create and switch to a different session
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# copy presets from the example session
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# start idle and error slack notification
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# unload last grid and load the current grid
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# acquire atlas
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# submit targets found on the atlas if full workflow is to be performed.
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# go through MSI flow as specified in the example session.
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If you need to modify the settings, you can still do so through leginon gui.  It will be used next time the node is engaged.