Run autoscreenpy » History » Version 2
Anchi Cheng, 08/09/2022 06:22 PM
1 | 1 | Anchi Cheng | h1. Run autoscreen.py |
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3 | If you have installed leginon, autoscreen.py is copied to script directory like start-leginon.py. Otherwise, you will find it under leginon directory. |
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5 | <pre> |
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6 | autoscreen.py |
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7 | </pre> |
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9 | It will ask a few questions |
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11 | <pre> |
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12 | 2 | Anchi Cheng | Enter autoloader cassette-grid mapping filename (leave it blank to use gui): /Users/acheng/grid.list |
13 | 1 | Anchi Cheng | Full workflow or atlas only (full/atlas): full |
14 | Enter an old session name to base new sessions on: 22mar02a |
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15 | Enter Z stage height to return to in um (default: the old sessionvalue 0.0): |
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16 | </pre> |
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18 | The rest is automated. |
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20 | h2. Things it will do for each grid: |
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22 | # create and switch to a different session |
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23 | # copy presets from the example session |
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24 | # start idle and error slack notification |
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25 | # unload last grid and load the current grid |
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26 | # acquire atlas |
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27 | # submit targets found on the atlas if full workflow is to be performed. |
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28 | # go through MSI flow as specified in the example session. |
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30 | If you need to modify the settings, you can still do so through leginon gui. It will be used next time the node is engaged. |