Run autoscreenpy » History » Version 2
Anchi Cheng, 08/09/2022 06:22 PM
| 1 | 1 | Anchi Cheng | h1. Run autoscreen.py |
|---|---|---|---|
| 2 | |||
| 3 | If you have installed leginon, autoscreen.py is copied to script directory like start-leginon.py. Otherwise, you will find it under leginon directory. |
||
| 4 | |||
| 5 | <pre> |
||
| 6 | autoscreen.py |
||
| 7 | </pre> |
||
| 8 | |||
| 9 | It will ask a few questions |
||
| 10 | |||
| 11 | <pre> |
||
| 12 | 2 | Anchi Cheng | Enter autoloader cassette-grid mapping filename (leave it blank to use gui): /Users/acheng/grid.list |
| 13 | 1 | Anchi Cheng | Full workflow or atlas only (full/atlas): full |
| 14 | Enter an old session name to base new sessions on: 22mar02a |
||
| 15 | Enter Z stage height to return to in um (default: the old sessionvalue 0.0): |
||
| 16 | </pre> |
||
| 17 | |||
| 18 | The rest is automated. |
||
| 19 | |||
| 20 | h2. Things it will do for each grid: |
||
| 21 | |||
| 22 | # create and switch to a different session |
||
| 23 | # copy presets from the example session |
||
| 24 | # start idle and error slack notification |
||
| 25 | # unload last grid and load the current grid |
||
| 26 | # acquire atlas |
||
| 27 | # submit targets found on the atlas if full workflow is to be performed. |
||
| 28 | # go through MSI flow as specified in the example session. |
||
| 29 | |||
| 30 | If you need to modify the settings, you can still do so through leginon gui. It will be used next time the node is engaged. |