Windows Installation » History » Version 15
Neil Voss, 06/18/2015 12:45 PM
1 | 1 | Amber Herold | h1. Windows Installation |
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6 | h2. Processing-side Leginon Windows Installation |
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11 | 13 | Amber Herold | h3. Install Python and Support Packages (Note that python 2.5 must be used): |
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15 | This list does not include pyton XML module because it is included in the python |
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16 | package for window. |
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20 | |_.Name:|_.Download site:| |
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21 | |Python 2.5*| "http://www.python.org":http://www.python.org| |
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22 | |Python for Windows extension (pywin32)| "http://sourceforge.net/projects/pywin32/":http://sourceforge.net/projects/pywin32/| |
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23 | |wxPython 2.5.2.8 or newer| "http://www.wxpython.org":http://www.wxpython.org| |
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24 | |MySQL Python client 1.2 or newer| "http://sourceforge.net/projects/mysql-python":http://sourceforge.net/projects/mysql-python| |
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25 | |Python Imaging Library (PIL) 1.1.4 or newer| "http://www.pythonware.com/products/pil/":http://www.pythonware.com/products/pil/| |
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26 | |NumPy 1.0b5 (tested, others may work)| "http://www.scipy.org":http://www.scipy.org| |
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27 | |SciPy 0.5.1 or newer| "http://www.scipy.org":http://www.scipy.org| |
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28 | |Tortoise SVN client| "http://tortoisesvn.tigris.org":http://tortoisesvn.tigris.org| |
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33 | *Python 2.5 is the only python version that we have compiled numExtension. libCV and |
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34 | comarray in. Therefore no other python version works for now. |
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37 | Execute the installer file and follow the directions. |
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43 | 13 | Amber Herold | h3. Packages required from NRAMM |
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47 | 4 | Amber Herold | These are the packages you will install with the python installer. |
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51 | |_.Name:|_.Purpose:| |
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52 | 14 | Anchi Cheng | | leginon|modular TEM image acquisition| |
53 | 1 | Amber Herold | | pyami|general functions| |
54 | | sinedon|Leginon/database interaction| |
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55 | 14 | Anchi Cheng | | pyscope|microscope control and monitoring| |
56 | | imageviewer|image viewing for tomography| |
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61 | 14 | Anchi Cheng | Because numextension and libcv requires extra compilers, we have created window |
62 | 5 | Amber Herold | installer for them for python 2.5 and made them available through "http://www.leginon.org/":http://www.leginon.org/. |
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64 | 14 | Anchi Cheng | These are the Leginon v2.0 python 2.5 compiled packages installed through python installer on Windows. |
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66 | |_.Downloadfile Name|_.Installed Python Package File|_.Purpose:| |
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67 | |NumExtension-1.2.0.win32-py2.5.exe|numextension.pyd|c extension for numerical processing| |
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68 | |libCV-0.2.win32-py2.5.exe|libCV.pyd|small c library of algorithm from computer vision field| |
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76 | 13 | Amber Herold | h3. Check out SVN Source Files from the depository |
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80 | Use your mouse to do the following |
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81 | 14 | Anchi Cheng | * Create Leginon2.0 directory somewhere at your convenience |
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84 | 14 | Anchi Cheng | * Change directory into Leginon2.0 |
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87 | 6 | Amber Herold | * Right-click the mouse botton in this directory window and select Tortoise svn |
88 | Checkout in the menu: |
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89 | 15 | Neil Voss | !/software/leginon/images/images/svnmenu.png! |
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92 | 15 | Neil Voss | * Set up svn checkout window like this to check out from /svn/myami/trunk to Leginon2.0 |
93 | !/software/leginon/images/images/svnco.png! |
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98 | 13 | Amber Herold | h3. Install the packages you downloaded from NRAMM svn depository |
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102 | * Start a command line Window from Start Menu |
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105 | * Install the package in each folder with commands such as |
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106 | 14 | Anchi Cheng | <pre>cd Your_Download_Place\Leginon2.0\leginon |
107 | 1 | Amber Herold | c:\\python25\python.exe setup.py install</pre> |
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113 | 13 | Amber Herold | h3. Download the two Window Installer Files from Leginon website |
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116 | "http://www.leginon.org/":http://www.leginon.org/ |
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122 | 13 | Amber Herold | h3. Install individual packages |
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126 | Excute the installer files and follow the instruction. |
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132 | 13 | Amber Herold | h3. Mapping Drives: |
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136 | 10 | Amber Herold | If you plan to run Leginon directly on the Windows machine, such as in [[Possible Computer Set-up Configurations#Configuration-C|Configuration C]], and your data files are served through a Samba server on a Linux machine, you will need to map the network drive. For example, if your Samba server has a hostname your_smbserver, and you have set up a share called [your_share_point] which points to /your_data_path/ and leginon data will be saved under a folder in /your_data_path/leginon/. |
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141 | * Start, My Computer |
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144 | * Tools menu, Map network drive |
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147 | * Use an unmapped drive such as Z: |
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149 | 11 | Amber Herold | Enter shared path in Windows format |
150 | 1 | Amber Herold | as |
151 | 11 | Amber Herold | <pre>\\your_smbserver\your_share_point</pre> |
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154 | * Add the drive and the Linux path to leginon.cfg on the Windows machine |
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155 | as |
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156 | 11 | Amber Herold | <pre>[Drive Mapping] |
157 | Z:/your_data_path</pre> |
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160 | * Add image path to leginon.cfg on the Windows machine in Linux format |
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161 | as |
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162 | <pre>[Images] |
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163 | 11 | Amber Herold | path:/your_data_path/leginon</pre> |
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167 | 13 | Amber Herold | h3. Configure leginon.cfg: |
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170 | Follow the instructions in [[Configure leginon.cfg|Configure leginon.cfg]] located in |
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171 | the section for Linux installation but note the location of the configuration files |
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172 | follows. In addition, if the storage disk is mapped onto the Windows PC as drive Z, this |
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173 | mapping should be included in leginon.cfg. See above. |
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178 | 13 | Amber Herold | * Configurations for all users |
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180 | 13 | Amber Herold | <pre> <Python directory>\Lib\site-packages\Leginon\config\leginon.cfg</pre> |
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182 | 13 | Amber Herold | Example: |
183 | <pre> C:\Python25\Lib\site-packages\Leginon\config\leginon.cfg</pre> |
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186 | 13 | Amber Herold | * Configurations for individual users |
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188 | 13 | Amber Herold | <pre> <Home directory>\leginon.cfg</pre> |
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190 | 13 | Amber Herold | Example: |
191 | <pre> C:\Documents and Settings\Leginon User\leginon.cfg </pre> |
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194 | 13 | Amber Herold | * A skeleton (default) configuration file is available: |
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196 | 13 | Amber Herold | <pre> C:\Python25\Lib\site-packages\Leginon\config\default.cfg</pre> |
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201 | 13 | Amber Herold | h3. Configure sinedon.cfg: |
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204 | Sinedon is designed to be able to interact with multiple databases. |
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206 | 13 | Amber Herold | Follow instruction in [[Configure sinedon.cfg]] in |
207 | 1 | Amber Herold | the section for Linux installation but note the location of the configuration files |
208 | follows. |
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213 | 13 | Amber Herold | * For all users, put sinedon.cfg with the installed package as |
214 | <pre>C:\Python25\Lib\site-packages\sinedon\sinedon.cfg</pre> |
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217 | 13 | Amber Herold | * Your home directory on Windows: |
218 | <pre>C:\Documents and Settings\your_name></pre> |
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221 | 13 | Amber Herold | * the skeleton sinedon configuration file is |
222 | <pre>C:\Python25\Lib\site-packages\sinedon\examples\sinedon.cfg</pre> |
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227 | 13 | Amber Herold | h3. Create Leginon and Leginon Client shortcut in Start menu menu under Leginon |
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230 | 13 | Amber Herold | This instruction applies to Windows XP. |
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233 | 13 | Amber Herold | * Go to C:\Documents and Settings\All Users\Start Menu\Programs\ and create a new |
234 | 1 | Amber Herold | folder named Leginon. |
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237 | 13 | Amber Herold | * In another window, go to |
238 | 14 | Anchi Cheng | <pre>C:\Python25\Lib\site-packages\leginon</pre> |
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241 | 13 | Amber Herold | * Create a shortcut from start-leginon.py as Leginon and a shortcut from launcher.py as Leginon Client. |
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244 | 13 | Amber Herold | * Move the two shortcuts into |
245 | <pre>C:\Documents and Settings\All Users\Start Menu\Programs\Leginon</pre> |
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251 | 13 | Amber Herold | h3. Additional Software (Optional): |
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254 | 15 | Neil Voss | TigerVNC (http://tigervnc.org/) -- allows remote access to windows screen. If you get tired of going into the microscope room just to open the column valves. |
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261 | h2. Database server Windows Installation |
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266 | 13 | Amber Herold | h3. We do not do this at NRAMM. Please follow the instruction in Linux installation and |
267 | 1 | Amber Herold | modify it for Windows at your own risk. |
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271 | For a good Windows specific instruction for general PHP configuration with MySQL for |
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272 | Apache 2 in Windows, try http://www.artfulsoftware.com/php_mysql_win.html. |
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273 | 2 | Amber Herold | |
274 | ______ |
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276 | [[Web Server Installation|< Web Server Installation]] | [[Additional installation on the microscope computer|Additional installation on the microscope computer >]] |
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280 | ______ |