Windows Installation All » History » Version 40
Anchi Cheng, 11/03/2015 10:13 PM
1 | 1 | Anchi Cheng | h1. Windows Installation |
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3 | 3 | Anchi Cheng | * You need to repeat installation of the general packages for each of the computer involved in Leginon operation with addition for the camera and scope. |
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5 | 1 | Anchi Cheng | |
6 | h2. Install Python and supporting packages with their installers |
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8 | {{include(Windows External Package installers)}} |
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10 | Excute the installer files and follow the instructions. |
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12 | {{include(add host)}} |
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13 | 1 | Anchi Cheng | |
14 | h2. Install the Windows Installer Files from created from source by NRAMM |
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16 | {{include(Windows Myami Package installers)}} |
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18 | 19 | Anchi Cheng | |
19 | 1 | Anchi Cheng | Execute the installer files and follow the instructions. |
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21 | h2. Install the packages you downloaded from NRAMM svn repository |
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23 | The svn checkout is a folder containing several subpackages. You will install the python packages using python installer |
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25 | h3. These are the sub-packages |
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27 | |_.Name:|_.Purpose:| |
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28 | | leginon|modular TEM image acquisition| |
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29 | | pyami|general functions| |
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30 | 9 | Anchi Cheng | | sinedon|database interaction| |
31 | 1 | Anchi Cheng | | pyscope|microscope control and monitoring| |
32 | | imageviewer|image viewing for tomography| |
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34 | If you recall Linux processing server installation instruction, this is a bit different. Numextension and LibCV are not included. Numextension is already installed with windows installer. libcv is not required by Leginon client that this part installation is aimed for. |
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36 | * Start a command line Window from Start Menu |
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38 | * Install the package in each folder with commands such as |
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39 | <pre>cd path_to\myami-VERSION\myami\leginon |
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40 | c:\\python27\python.exe setup.py install</pre> |
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41 | Then continue with the other packages, replacing leginon with the package name. See "These are the sub-packages of myami that you will install with the python installer." section above for complete list. |
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43 | 30 | Anchi Cheng | ______ |
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45 | 29 | Anchi Cheng | h1. The following depends on what instrument is controlled by the computer |
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47 | 32 | Anchi Cheng | You can also refer to Specific notes for various instrument in [[Installation_on_the_instrument_computers]] |
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49 | 27 | Anchi Cheng | h2. Register TecnaiCCD.dll (Gatan 32-bit DM on FEI microscope), CAMC4.exe (For Tietz camera), and adaexp.exe (For film exposure) |
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51 | * From the command prompt, run the following commands. You may need to enter the full path of the exe or dll: |
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52 | <pre>adaexp.exe /regserver |
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53 | CAMC4.exe /regserver |
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54 | REGSVR32 TecnaiCCD.dll</pre> |
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55 | 26 | Anchi Cheng | |
56 | 36 | Anchi Cheng | In one case, we also had to [[find and register a dll file as command components in Windows|find and register TEM Scripting]] for an FEI scope |
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58 | 38 | Anchi Cheng | h2. install comtypes if this *32-bit computer is for the microscope, or any camera other than Gatan K2 Summit*. |
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60 | {{include(Comtypes_installer)}} |
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62 | 23 | Anchi Cheng | h2. Modify comtypes if it is used: |
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64 | 23 | Anchi Cheng | This include |
65 | * TIA controlling camera |
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66 | * Gatan camera is controlled by older, 32-bit computer |
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67 | * JEOL models that uses JEOL COM library. |
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69 | 16 | Anchi Cheng | IMPORTANT: After installing comtypes, you must make one modification to it. The module "safearray.py" that comes with comtypes must be replaced with a modified version that we provide. You can find the custom version of safearray.py in the pyscope package. Please copy this module from pyscope into the installed comtypes folder: C:\Python2*\Lib\site-packages\comtypes\. It should replace the safearray.py that is included in comtypes. |
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71 | 1 | Anchi Cheng | Remove safearray.pyc in C:\Python2*\Lib\site-packages\comtypes\ if it does not appear to recompile (timestamp of the file change) when you import comtype in python command line |
72 | <pre> |
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73 | import comtypes |
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74 | </pre> |
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76 | 40 | Anchi Cheng | h2. Run checkcom.py if comtypes is used or run updatecom.py if pywin is used (TIVPS camera) |
77 | 1 | Anchi Cheng | |
78 | From a command line window: |
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80 | <pre>cd C:\python27\Lib\site-packages\pyscope |
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81 | 39 | Anchi Cheng | C:\python27\python.exe checkcom.py</pre> |
82 | or |
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83 | 1 | Anchi Cheng | C:\python27\python.exe updatecom.py</pre> |
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85 | The python window appears should say show the required type libraries it found: |
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86 | <pre> |
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87 | Generating .py files from type libraries... |
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88 | 24 | Anchi Cheng | initializing TEM Scripting |
89 | Found TEM Scripting |
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90 | or |
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91 | Found Tecnai Scripting |
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92 | done. |
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93 | 1 | Anchi Cheng | |
94 | 24 | Anchi Cheng | initializing TOM Moniker |
95 | Found TOMMoniker 1.0 Type Library |
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96 | done. |
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97 | 21 | Anchi Cheng | |
98 | 24 | Anchi Cheng | ..... |
99 | 1 | Anchi Cheng | </pre> |
100 | 25 | Anchi Cheng | The output depends, of course, on what is available on your microscope/camera computer. For FEI scopes, you should find either "Tecnai Scripting" or "TEM Scripting" and "TOM Moniker". For Tietz camera, you should find 'CAMC4 1.0 Type Library' |
101 | 1 | Anchi Cheng | |
102 | You will only find Tecnai Exposure Adaptor (Scripting for film exposure) if you ask FEI for it. |
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104 | 39 | Anchi Cheng | The updatecom.py script should generate a few files in C:\\python27\Lib\win32com\gen_py with seemly scrambled names such as BC0A2B03-19FF-11D3-AE00-00A024CBA50Cx0x1x9.py |
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106 | 31 | Anchi Cheng | h2. Install SEMCCD as Digital Micrograph plugin (Gatan 64-bit computer such as that for K2 camera only) |
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108 | {{include(Install_SerialEM_DigitalMicrograph_plugin)}} |
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109 | 4 | Anchi Cheng | |
110 | 22 | Anchi Cheng | h2. Install Google protobuf (DE camera only) |
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112 | {{include(portobuf installation instruction)}} |
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116 | 7 | Anchi Cheng | h2. Register the Tietz ping callback function (Tietz camera only) |
117 | 5 | Anchi Cheng | |
118 | * From a command line window: |
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120 | 11 | Anchi Cheng | <pre>cd C:\python27\Lib\site-packages\pyscope |
121 | 5 | Anchi Cheng | C:\python27\python.exe tietzping.py</pre> |
122 | 1 | Anchi Cheng | |
123 | 7 | Anchi Cheng | h2. camc.ini setup (Tietz camera only) |
124 | 8 | Anchi Cheng | |
125 | 6 | Anchi Cheng | {{include(CAMC_ini_setup)}} |
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127 | 5 | Anchi Cheng | |
128 | 4 | Anchi Cheng | ______ |
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130 | [[Windows_Package_Requirement_30|< Package Requirement]] | [[Windows_Myami_Configuration| Configurations related to Leginon >]] |
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133 | ______ |