Project

General

Profile

Windows Installation All » History » Version 50

Patrick Goetz, 10/19/2017 03:36 PM

1 1 Anchi Cheng
h1. Windows Installation
2
3 3 Anchi Cheng
* You need to repeat installation of the general packages for each of the computer involved in Leginon operation with addition for the camera and scope.
4
5 1 Anchi Cheng
6 44 Anchi Cheng
h2. Install Python and supporting packages with their installers.  *Only Gatan K2 computer uses 64-bit version of python*.
7 1 Anchi Cheng
8
{{include(Windows External Package installers)}}
9
10
Excute the installer files and follow the instructions.
11 34 Anchi Cheng
12
{{include(add host)}}
13 1 Anchi Cheng
14
h2. Install the Windows Installer Files from created from source by NRAMM
15
16
{{include(Windows Myami Package installers)}}
17
18 19 Anchi Cheng
19 1 Anchi Cheng
Execute the installer files and follow the instructions.
20
21 47 Anchi Cheng
h2. Install the packages you downloaded from NRAMM repository
22 1 Anchi Cheng
23 47 Anchi Cheng
The svn checkout is a folder containing several subpackages.  You will install the python packages using python installer.  *See the next section if you want to use directly the git/svn checkout*.
24 1 Anchi Cheng
25
h3. These are the sub-packages  
26
27
|_.Name:|_.Purpose:|
28
| leginon|modular TEM image acquisition|
29
| pyami|general functions|
30 9 Anchi Cheng
| sinedon|database interaction|
31 1 Anchi Cheng
| pyscope|microscope control and monitoring|
32
| imageviewer|image viewing for tomography|
33
34 41 Anchi Cheng
If you recall Linux processing server installation instruction, this is a bit different. Numextension and LibCV are not included.  Numextension is already installed with windows installer.  libcv and opencv are not required by Leginon client that this part installation is aimed for.
35 1 Anchi Cheng
36
* Start a command line Window from Start Menu
37
38
* Install the package in each folder with commands such as
39
<pre>cd path_to\myami-VERSION\myami\leginon
40
c:\\python27\python.exe setup.py install</pre>
41
Then continue with the other packages, replacing leginon with the package name. See "These are the sub-packages of myami that you will install with the python installer." section above for complete list.
42 41 Anchi Cheng
43 48 Anchi Cheng
h2. (Alternative approach, easy for updating) Set environment variable PYTHONPATH to use svn checkout or git clone directly
44 41 Anchi Cheng
45 42 Anchi Cheng
{{include(set pythonpath environment variable for local myami sandbox)}}
46 41 Anchi Cheng
47 27 Anchi Cheng
48 30 Anchi Cheng
______
49
50 29 Anchi Cheng
h1. The following depends on what instrument is controlled by the computer
51 33 Anchi Cheng
52 32 Anchi Cheng
You can also refer to Specific notes for various instrument in [[Installation_on_the_instrument_computers]]
53 33 Anchi Cheng
54 27 Anchi Cheng
h2. Register TecnaiCCD.dll (Gatan 32-bit DM on FEI microscope), CAMC4.exe (For Tietz camera), and adaexp.exe (For film exposure)
55
56
*  From the command prompt, run the following commands.  You may need to enter the full path of the exe or dll:
57
<pre>adaexp.exe /regserver
58
CAMC4.exe /regserver
59
REGSVR32 TecnaiCCD.dll</pre>
60 26 Anchi Cheng
61 36 Anchi Cheng
In one case, we also had to [[find and register a dll file as command components in Windows|find and register TEM Scripting]] for an FEI scope
62 35 Anchi Cheng
63 46 Anchi Cheng
h2. install comtypes if this is for the microscope, or any camera other than Gatan K2 Summit* nor TVIPS.
64 26 Anchi Cheng
65
{{include(Comtypes_installer)}}
66 23 Anchi Cheng
67
h2. Modify comtypes if it is used:
68
69 16 Anchi Cheng
IMPORTANT:  After installing comtypes, you must make one modification to it.  The module "safearray.py" that comes with comtypes must be replaced with a modified version that we provide.   You can find the custom version of safearray.py in the pyscope package.  Please copy this module from pyscope into the installed comtypes folder:  C:\Python2*\Lib\site-packages\comtypes\.   It should replace the safearray.py that is included in comtypes.
70
71 1 Anchi Cheng
Remove safearray.pyc in C:\Python2*\Lib\site-packages\comtypes\ if it does not appear to recompile (timestamp of the file change) when you import comtype in python command line
72
<pre>
73
import comtypes
74
</pre>
75
76 40 Anchi Cheng
h2. Run checkcom.py if comtypes is used or run updatecom.py if pywin is used (TIVPS camera)
77 1 Anchi Cheng
78
From a command line window:
79
80
<pre>cd C:\python27\Lib\site-packages\pyscope
81 39 Anchi Cheng
C:\python27\python.exe checkcom.py</pre>
82
or
83 1 Anchi Cheng
C:\python27\python.exe updatecom.py</pre>
84
85
The python window appears should say show the required type libraries it found:
86
<pre>
87
Generating .py files from type libraries...
88 24 Anchi Cheng
initializing TEM Scripting
89
Found TEM Scripting
90
or
91
Found Tecnai Scripting
92
done.
93 1 Anchi Cheng
94 24 Anchi Cheng
initializing TOM Moniker
95
Found TOMMoniker 1.0 Type Library
96
done.
97 21 Anchi Cheng
98 24 Anchi Cheng
.....
99 1 Anchi Cheng
</pre>
100 25 Anchi Cheng
The output depends, of course, on what is available on your microscope/camera computer.  For FEI scopes, you should find either "Tecnai Scripting" or "TEM Scripting" and "TOM Moniker".  For Tietz camera, you should find 'CAMC4 1.0 Type Library'
101 1 Anchi Cheng
102
You will only find Tecnai Exposure Adaptor (Scripting for film exposure) if you ask FEI for it.
103
104 39 Anchi Cheng
The updatecom.py script should generate a few files in C:\\python27\Lib\win32com\gen_py with seemly scrambled names such as BC0A2B03-19FF-11D3-AE00-00A024CBA50Cx0x1x9.py
105 15 Anchi Cheng
106 31 Anchi Cheng
h2. Install SEMCCD as Digital Micrograph plugin (Gatan 64-bit computer such as that for K2 camera only)
107 15 Anchi Cheng
108
{{include(Install_SerialEM_DigitalMicrograph_plugin)}}
109 4 Anchi Cheng
110 22 Anchi Cheng
h2. Install Google protobuf (DE camera only)
111
112 50 Patrick Goetz
{{include(portobuf installation instruction)}}
113 22 Anchi Cheng
114 7 Anchi Cheng
h2. Register the Tietz ping callback function (Tietz camera only)
115 5 Anchi Cheng
116
* From a command line window:
117
118 11 Anchi Cheng
<pre>cd C:\python27\Lib\site-packages\pyscope
119 5 Anchi Cheng
C:\python27\python.exe tietzping.py</pre>
120 1 Anchi Cheng
121 7 Anchi Cheng
h2. camc.ini setup (Tietz camera only)
122 8 Anchi Cheng
123 6 Anchi Cheng
{{include(CAMC_ini_setup)}}
124
125 5 Anchi Cheng
126 4 Anchi Cheng
______
127
128
[[Windows_Package_Requirement_30|< Package Requirement]] | [[Windows_Myami_Configuration| Configurations related to Leginon >]]
129
130
131
______