Anonymous datasets » History » Version 1
Sargis Dallakyan, 04/07/2015 08:44 PM
| 1 | 1 | Sargis Dallakyan | h1. Anonymous datasets |
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| 3 | bq. *Note:* Not all sets are currently available. Older sets are in the process of being retrieved from archives and will be available soon. |
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| 6 | All datasets below are available in the NRAMM "Anonymous datasets viewer":http://emportal.nysbc.org/myamiweb/imageviewer.php?expId=6592. |
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| 8 | * You can also click on the Session Name below (e.g. 09apr14b) to pop up a web viewer to browse the images. See "Leginon viewer help":http://emg.nysbc.org/projects/appion/wiki/Image_Viewers for more information on viewing these images. Note that you will need to login once as an Anonymous user before you can access the datasets. Images can be downloaded one-by-one from the Leginon viewer or as an entire set using the [[Dbemwiz|dbemwiz.jar]] tool and selecting the appropriate experiment names (e.g. 05oct20a). |
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| 10 | * Summary information may be viewed by selecting the Summary option at the top of the viewer window which will pop up a new window. |
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| 12 | * [[appion:|Appion processing pipeline information]] and all metadata may be accessed by selecting the Processing button at the top of the viewer window which will pop up a new window. |
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| 14 | h2. List of datasets available to the anonymous user: |
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| 16 | table{border:1px solid black}. |
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| 17 | {background:#ddd}. |Session Name|Leginon Description|Wiki link|Reference| |
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| 18 | | "09apr14b":http://emportal.nysbc.org/myamiweb/imageviewer.php?expId=6592 | 50S Ribosome, 100k particles | [[Ab_initio_model_datasets]] | "Voss _et al._ 2010":http://www.ncbi.nlm.nih.gov/pubmed/20018246 | |
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| 19 | | "09mar04b":http://emportal.nysbc.org/myamiweb/imageviewer.php?expId=6498 | 50S Ribosome on Pt Coated C_Flats | [[Ab_initio_model_datasets]] | "Voss _et al._ 2010":http://www.ncbi.nlm.nih.gov/pubmed/20018246 | |
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| 20 | | "09feb18c":http://emportal.nysbc.org/myamiweb/imageviewer.php?expId=6453 | 50S Ribosome tomography | [[Ab_initio_model_datasets]] | "Voss _et al._ 2010":http://www.ncbi.nlm.nih.gov/pubmed/20018246 | |
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| 21 | | "09feb12b":http://emportal.nysbc.org/myamiweb/imageviewer.php?expId=6433 | 50S Ribosome RCT data | [[Ab_initio_model_datasets]] | "Voss _et al._ 2010":http://www.ncbi.nlm.nih.gov/pubmed/20018246 | |
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| 22 | | "06jul12a":http://emportal.nysbc.org/myamiweb/imageviewer.php?expId=3956 | GroEL at 100kX, 120KeV | [[06jul12a_GroEL_dataset]] | "Stagg _et al._ 2008":http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2505049 | |
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| 23 | | "06apr27c":http://emportal.nysbc.org/myamiweb/imageviewer.php?expId=3810 | TMV 40mg/ml | [[TMV_datasets]] | _unpublished_ | |
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| 24 | | "06mar09a":http://emportal.nysbc.org/myamiweb/imageviewer.php?expId=3310 | GroEL at 100kX | [[06jul12a_GroEL_dataset]] | "Stagg _et al._ 2008":http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2505049 | |
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| 25 | | "05may19a":http://emportal.nysbc.org/myamiweb/imageviewer.php?expId=1933 | GroEL at 50kX, 250,000 particles | [[05may19a_GroEL_dataset]] | "Stagg _et al._ 2006":http://www.ncbi.nlm.nih.gov/pubmed/16762565 | |
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| 26 | | "05oct20a":http://emportal.nysbc.org/myamiweb/imageviewer.php?expId=2457 | P22 mature virion | [[P22_datasets]] | "Lander _et al._ 2006":http://www.ncbi.nlm.nih.gov/pubmed/16709746 | |
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| 27 | | "05oct27b":http://emportal.nysbc.org/myamiweb/imageviewer.php?expId=2553 | P22 mature virion | [[P22_datasets]] | "Lander _et al._ 2006":http://www.ncbi.nlm.nih.gov/pubmed/16709746 | |
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| 28 | | "05nov11a":http://emportal.nysbc.org/myamiweb/imageviewer.php?expId=2685 | P22 mature virion | [[P22_datasets]] | "Lander _et al._ 2006":http://www.ncbi.nlm.nih.gov/pubmed/16709746 | |
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| 29 | | "05dec13a":http://emportal.nysbc.org/myamiweb/imageviewer.php?expId=2824 | P22 mature virion | [[P22_datasets]] | "Lander _et al._ 2006":http://www.ncbi.nlm.nih.gov/pubmed/16709746 | |
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| 30 | | "07mar29b":http://emportal.nysbc.org/myamiweb/imageviewer.php?expId=4438 | Lambda virion | [[Lambda_virion_datasets]] | "Lander _et al._ 2008":http://www.ncbi.nlm.nih.gov/pubmed/18786402 | |
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| 31 | | "07apr02a":http://emportal.nysbc.org/myamiweb/imageviewer.php?expId=4446 | Lambda virion | [[Lambda_virion_datasets]] | "Lander _et al._ 2008":http://www.ncbi.nlm.nih.gov/pubmed/18786402 | |
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| 32 | | "07apr20d":http://emportal.nysbc.org/myamiweb/imageviewer.php?expId=4488 | Lambda virion | [[Lambda_virion_datasets]] | "Lander _et al._ 2008":http://www.ncbi.nlm.nih.gov/pubmed/18786402 | |
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| 33 | | "07aug15c":http://emportal.nysbc.org/myamiweb/imageviewer.php?expId=4812 | Lambda virion | [[Lambda_virion_datasets]] | "Lander _et al._ 2008":http://www.ncbi.nlm.nih.gov/pubmed/18786402 | |
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| 34 | | "07aug22a":http://emportal.nysbc.org/myamiweb/imageviewer.php?expId=4824 | Lambda virion | [[Lambda_virion_datasets]] | "Lander _et al._ 2008":http://www.ncbi.nlm.nih.gov/pubmed/18786402 | |
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| 35 | | "07sep23a":http://emportal.nysbc.org/myamiweb/imageviewer.php?expId=4918 | Lambda virion | [[Lambda_virion_datasets]] | "Lander _et al._ 2008":http://www.ncbi.nlm.nih.gov/pubmed/18786402 | |
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| 37 | h2. Former public datasets from old Leginon database: |
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| 39 | table{border:1px solid black}. |
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| 40 | {background:#ddd}. |Session Name|Description|Wiki link|Reference| |
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| 41 | | 03oct09b | GroEL control qfoil (p11 log book) | [[GroEL Dataset I]] | | |
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| 42 | | 02oct09a | Hemocyanin | [[KLH Dataset II]] | | |
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| 43 | | 01nov26b | first look at hemocyanin, 2nd grid | [[KLH Dataset I]] | "Zhu _et al._ 2004":http://www.ncbi.nlm.nih.gov/pubmed/15065668 | |
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| 45 | h2. Possible future additions after publication: |
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| 47 | * Poliovirus, "09sep25a":http://emportal.nysbc.org/myamiweb/imageviewer.php?expId=7043 |
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| 48 | * CNV, "10apr19a":http://emportal.nysbc.org/myamiweb/imageviewer.php?expId=7508 |
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| 49 | * More of test-bed GroEL datasets, e.g. 200kV |
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| 50 | * 30S time-series assembly. |