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Synthetic 70S Ribosome Datasets » History » Version 1

Sargis Dallakyan, 04/07/2015 08:47 PM

1 1 Sargis Dallakyan 
h1. Synthetic 70S Ribosome Datasets
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Synthetic datasets used to evaluate likelihood-based classification in Frealign from "Lyumkis _et al._ 2013":http://www.ncbi.nlm.nih.gov/pubmed/23872434





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* "synthetic 70S ribosome dataset with final signal-to-noise ration 0.100":http://nramm.nysbc.org/data/2013/synthetic_data/combined_snr0_100.mrc





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* "synthetic 70S ribosome dataset with final signal-to-noise ration 0.050":http://nramm.nysbc.org/data/2013/synthetic_data/combined_snr0_050.mrc





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* "synthetic 70S ribosome dataset with final signal-to-noise ration 0.025":http://nramm.nysbc.org/data/2013/synthetic_data/combined_snr0_025.mrc





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* "synthetic 70S ribosome dataset with final signal-to-noise ration 0.013":http://nramm.nysbc.org/data/2013/synthetic_data/combined_snr0_013.mrc





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* "synthetic 70S ribosome dataset with final signal-to-noise ration 0.006":http://nramm.nysbc.org/data/2013/synthetic_data/combined_snr0_006.mrc





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h4. Parameter files: 





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* "Frealign parameter file describing the true angles and class correspondence for EMD-1798 (occ value = 100.00)":http://nramm.nysbc.org/data/2013/synthetic_data/true_angles_emdb_1798.par 





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* "Frealign parameter file describing the true angles and class correspondence for EMD-1799 (occ value = 100.00)":http://nramm.nysbc.org/data/2013/synthetic_data/true_angles_emdb_1799.par





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* "Frealign parameter file describing the true angles and class correspondence for EMD-5030 (occ value = 100.00)":http://nramm.nysbc.org/data/2013/synthetic_data/true_angles_emdb_5030.par





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* "Frealign parameter file used to initiate classification from non-randomized angles / shifts":http://nramm.nysbc.org/data/2013/synthetic_data/combined_0.par





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* "Frealign parameter file used to initiate classification from randomized angles / shifts":http://nramm.nysbc.org/data/2013/synthetic_data/combined_r_0.par