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FindEM » History » Version 3

Amber Herold, 12/13/2013 11:41 AM

1 1 Amber Herold 
h1. FindEM
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> *Description:*  fast local correlation function particle picker





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> *Version:* 2.0





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> *Release Date:* 28-Jan-2009





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> *Downloads:* attachment:findem-2.0.tgz





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> *Contact:* For more information contact us at _amisoftware@scripps.edu_.





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> *Supported OS:* !http://emg.nysbc.org/attachments/download/341/supports_linux.png!Linux/x86    !http://emg.nysbc.org/attachments/download/342/supports_irix.gif!IRIX    !http://emg.nysbc.org/attachments/download/343/supports_windows.gif!Windows    !http://emg.nysbc.org/attachments/download/344/supports_osx.png!MacOS X





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> *Documentaion:* "FindEM--a fast, efficient program for automatic selection of particles from electron micrographs." (2004) Roseman AM. J Struct Biol. v145(1-2).  PMID: 15065677





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We don't use FindEM directly in the AMI lab. It is wrapped up in our Appion software which provides a user interface.





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Using FindEM directly is difficult, requiring you to write separate scripts for each processing thread used for each template. Results then need to be played with quite a bit to understand/visualize. AMI has no documentation related to using FindEM outside of Appion. You can view the "Appion wrapped FindEM Help page":http://emg.nysbc.org/projects/appion/wiki/Template_Picking for using FindEM within Appion.