Project

General

Profile

Bug #4614 » coran1.appionsub.log

Anchi Cheng, 11/23/2016 06:48 PM

 
RuntimeError: module compiled against API version 6 but this version of numpy is 4
... Time stamp: 16nov23l38
... Function name: clusterCoran
... Appion directory: /opt/myamisnap/lib
... Processing hostname: node04
... Using split database
Connected to database: 'nyap_286'
... Committing data to database
... Run directory: /gpfs/appion/waik/16nov22b/align/coran1
!!! WARNING: directory '/gpfs/appion/waik/16nov22b/align/coran1' already exists.
... Writing function log to: clusterCoran.log
... Uploading ScriptData....
... Found 1 processors on this machine
... Looking up session, 16nov22b
... Running Appion version 'trunk'
EMAN: proc2d /gpfs/appion/waik/16nov22b/align/noref1/alignstack.hed /gpfs/appion/waik/16nov22b/align/noref1/alignstack_hed.spi spiderswap
EMAN 1.9 Cluster ($Date: 2009/02/18 05:12:22 $).
Run 'proc2d help' for detailed help.
10 complete
20 complete
30 complete
40 complete
50 complete
60 complete
70 complete
80 complete
90 complete
100 complete
110 complete
120 complete
130 complete
140 complete
150 complete
160 complete
170 complete
180 complete
190 complete
200 complete
210 complete
220 complete
230 complete
240 complete
250 complete
260 complete
270 complete
280 complete
290 complete
300 complete
310 complete
320 complete
330 complete
340 complete
350 complete
360 complete
370 complete
380 complete
390 complete
400 complete
410 complete
420 complete
430 complete
440 complete
450 complete
460 complete
470 complete
480 complete
490 complete
500 complete
510 complete
520 complete
530 complete
540 complete
550 complete
560 complete
570 complete
580 complete
590 complete
600 complete
610 complete
620 complete
630 complete
640 complete
650 complete
660 complete
670 complete
680 complete
690 complete
700 complete
710 complete
720 complete
730 complete
740 complete
750 complete
760 complete
770 complete
780 complete
790 complete
800 complete
810 complete
820 complete
830 complete
840 complete
850 complete
860 complete
870 complete
880 complete
890 complete
900 complete
910 complete
920 complete
930 complete
940 complete
950 complete
960 complete
970 complete
980 complete
990 complete
1000 complete
1010 complete
1020 complete
1030 complete
1040 complete
1050 complete
1060 complete
1070 complete
1080 complete
1090 complete
1100 complete
1110 complete
1120 complete
1130 complete
1140 complete
1150 complete
1160 complete
1170 complete
1180 complete
1190 complete
1200 complete
1210 complete
1220 complete
1230 complete
1240 complete
1250 complete
1260 complete
1270 complete
1280 complete
1290 complete
1300 complete
1310 complete
1320 complete
1330 complete
1340 complete
1350 complete
1360 complete
1370 complete
1380 complete
1390 complete
1400 complete
1410 complete
1420 complete
1430 complete
1440 complete
1450 complete
1460 complete
1470 complete
1480 complete
1490 complete
1500 complete
1510 complete
1520 complete
1530 complete
1540 complete
1550 complete
1560 complete
1570 complete
1580 complete
1590 complete
1600 complete
1610 complete
1620 complete
1630 complete
1640 complete
1650 complete
1660 complete
1670 complete
1680 complete
1690 complete
1700 complete
1710 complete
1720 complete
1730 complete
1740 complete
1750 complete
1760 complete
1770 complete
1780 complete
1790 complete
1800 complete
1810 complete
1820 complete
1830 complete
1840 complete
1850 complete
1860 complete
1870 complete
1880 complete
1890 complete
1900 complete
1910 complete
1920 complete
1930 complete
1940 complete
1950 complete
1960 complete
1970 complete
1980 complete
1990 complete
2000 complete
2010 complete
2020 complete
2030 complete
2040 complete
2050 complete
2060 complete
2070 complete
2080 complete
2090 complete
2100 complete
2110 complete
2120 complete
2130 complete
2140 complete
2150 complete
2160 complete
2170 complete
2180 complete
2190 complete
2200 complete
2210 complete
2220 complete
2230 complete
2240 complete
2250 complete
2260 complete
2270 complete
2280 complete
2290 complete
2300 complete
2310 complete
2320 complete
2330 complete
2340 complete
2350 complete
2360 complete
2370 complete
2380 complete
2390 complete
2400 complete
2410 complete
2420 complete
2430 complete
2440 complete
2450 complete
2460 complete
2470 complete
2480 complete
2490 complete
2500 complete
2510 complete
2520 complete
2530 complete
2540 complete
2550 complete
2560 complete
2570 complete
2580 complete
2590 complete
2600 complete
2610 complete
2620 complete
2630 complete
2640 complete
2650 complete
2660 complete
2670 complete
2680 complete
2690 complete
2700 complete
2710 complete
2720 complete
2730 complete
2740 complete
2750 complete
2760 complete
2770 complete
2780 complete
2790 complete
2800 complete
2810 complete
2820 complete
2830 complete
2840 complete
2850 complete
2860 complete
2870 complete
2880 complete
2890 complete
2900 complete
2910 complete
2920 complete
2930 complete
2940 complete
2950 complete
2960 complete
2970 complete
2980 complete
2990 complete
3000 complete
3010 complete
3020 complete
3030 complete
3040 complete
3050 complete
3060 complete
3070 complete
3080 complete
3090 complete
3100 complete
3110 complete
3120 complete
3130 complete
3140 complete
3150 complete
3160 complete
3170 complete
3180 complete
3190 complete
3200 complete
3210 complete
3220 complete
3230 complete
3240 complete
3250 complete
3260 complete
3270 complete
3280 complete
3290 complete
3300 complete
3310 complete
3320 complete
3330 complete
3340 complete
3350 complete
3360 complete
3370 complete
3380 complete
3390 complete
3400 complete
3410 complete
3420 complete
3430 complete
3440 complete
3450 complete
3460 complete
3470 complete
3480 complete
3490 complete
3500 complete
3510 complete
3520 complete
3530 complete
3540 complete
3550 complete
3560 complete
3570 complete
3580 complete
3590 complete
3600 complete
3610 complete
3620 complete
3630 complete
3640 complete
3650 complete
3660 complete
3670 complete
3680 complete
3690 complete
3700 complete
3710 complete
3720 complete
3730 complete
3740 complete
3750 complete
3760 complete
3770 complete
3780 complete
3790 complete
3800 complete
3810 complete
3820 complete
3830 complete
3840 complete
3850 complete
3860 complete
3870 complete
3880 complete
3890 complete
3900 complete
3910 complete
3920 complete
3930 complete
3940 complete
3950 complete
3960 complete
3970 complete
3980 complete
3990 complete
4000 complete
4010 complete
4020 complete
4030 complete
4040 complete
4050 complete
4060 complete
4070 complete
4080 complete
4090 complete
4100 complete
4110 complete
4120 complete
4130 complete
4140 complete
4150 complete
4160 complete
4170 complete
4180 complete
4190 complete
4200 complete
4210 complete
4220 complete
4230 complete
4240 complete
4250 complete
4260 complete
4270 complete
4280 complete
4290 complete
4300 complete
4310 complete
4320 complete
4330 complete
4340 complete
4350 complete
4360 complete
4370 complete
4380 complete
4390 complete
4400 complete
4410 complete
4420 complete
4430 complete
4440 complete
4450 complete
4460 complete
4470 complete
4480 complete
4490 complete
4500 complete
4510 complete
4520 complete
4530 complete
4540 complete
4550 complete
4560 complete
4570 complete
4580 complete
4590 complete
4600 complete
4610 complete
4620 complete
4630 complete
4640 complete
4650 complete
4660 complete
4670 complete
4680 complete
4690 complete
4700 complete
4710 complete
4720 complete
4730 complete
4740 complete
4750 complete
4760 complete
4770 complete
4780 complete
4790 complete
4800 complete
4810 complete
4820 complete
4830 complete
4840 complete
4850 complete
4860 complete
4870 complete
4880 complete
4890 complete
4900 complete
4910 complete
4920 complete
4930 complete
4940 complete
4950 complete
4960 complete
4970 complete
4980 complete
4990 complete
5000 complete
5010 complete
5020 complete
5030 complete
5040 complete
5050 complete
5060 complete
5070 complete
5080 complete
5090 complete
5100 complete
5110 complete
5120 complete
5130 complete
5140 complete
5150 complete
5160 complete
5170 complete
5180 complete
5190 complete
5200 complete
5210 complete
5220 complete
5230 complete
5240 complete
5250 complete
5260 complete
5270 complete
5280 complete
5290 complete
5300 complete
5310 complete
5320 complete
5330 complete
5340 complete
5350 complete
5360 complete
5370 complete
5380 complete
5390 complete
5400 complete
5410 complete
5420 complete
5430 complete
5440 complete
5450 complete
5460 complete
5470 complete
5480 complete
5490 complete
5500 complete
5510 complete
5520 complete
5530 complete
5540 complete
5550 complete
5560 complete
5570 complete
5580 complete
5590 complete
5600 complete
5610 complete
5620 complete
5630 complete
5640 complete
5650 complete
5660 complete
5670 complete
5680 complete
5690 complete
5700 complete
5710 complete
5720 complete
5730 complete
5740 complete
5750 complete
5760 complete
5770 complete
5780 complete
5790 complete
5800 complete
5810 complete
5820 complete
5830 complete
5840 complete
5850 complete
5860 complete
5870 complete
5880 complete
5890 complete
5900 complete
5910 complete
5920 complete
5930 complete
5940 complete
5950 complete
5960 complete
5970 complete
5980 complete
5990 complete
6000 complete
6010 complete
6020 complete
6030 complete
6040 complete
6050 complete
6060 complete
6070 complete
6080 complete
6090 complete
6100 complete
6110 complete
6120 complete
6130 complete
6140 complete
6150 complete
6160 complete
6170 complete
6180 complete
6190 complete
6200 complete
6210 complete
6220 complete
6230 complete
6240 complete
6250 complete
6260 complete
6270 complete
6280 complete
6290 complete
6300 complete
6310 complete
6320 complete
6330 complete
6340 complete
6350 complete
6360 complete
6370 complete
6380 complete
6390 complete
6400 complete
6410 complete
6420 complete
6430 complete
6440 complete
6450 complete
6460 complete
6470 complete
6480 complete
6490 complete
6500 complete
6510 complete
6520 complete
6530 complete
6540 complete
6550 complete
6560 complete
6570 complete
6580 complete
6590 complete
6600 complete
6610 complete
6620 complete
6630 complete
6640 complete
6650 complete
6660 complete
6670 complete
6680 complete
6690 complete
6700 complete
6710 complete
6720 complete
6730 complete
6740 complete
6750 complete
6760 complete
6770 complete
6780 complete
6790 complete
6800 complete
6810 complete
6820 complete
6830 complete
6840 complete
6850 complete
6860 complete
6870 complete
6880 complete
6890 complete
6900 complete
6910 complete
6920 complete
6930 complete
6940 complete
6950 complete
6960 complete
6970 complete
6980 complete
6990 complete
7000 complete
7010 complete
7020 complete
7030 complete
7040 complete
7050 complete
7060 complete
7070 complete
7080 complete
7090 complete
7100 complete
7110 complete
7120 complete
7130 complete
7140 complete
7150 complete
7160 complete
7170 complete
7180 complete
7190 complete
7200 complete
7210 complete
7220 complete
7230 complete
7240 complete
7250 complete
7260 complete
7270 complete
7280 complete
7290 complete
7300 complete
7310 complete
7320 complete
7330 complete
7340 complete
7350 complete
7360 complete
7370 complete
7380 complete
7390 complete
7400 complete
7410 complete
7420 complete
7430 complete
7440 complete
7450 complete
7460 complete
7470 complete
7480 complete
7490 complete
7500 complete
7510 complete
7520 complete
7530 complete
7540 complete
7550 complete
7560 complete
7570 complete
7580 complete
7590 complete
7600 complete
7610 complete
7620 complete
7630 complete
7640 complete
7650 complete
7660 complete
7670 complete
7680 complete
7690 complete
7700 complete
7710 complete
7720 complete
7730 complete
7740 complete
7750 complete
7760 complete
7770 complete
7780 complete
7790 complete
7800 complete
7810 complete
7820 complete
7830 complete
7840 complete
7850 complete
7860 complete
7870 complete
7880 complete
7890 complete
7900 complete
7910 complete
7920 complete
7930 complete
7940 complete
7950 complete
7960 complete
7970 complete
7980 complete
7990 complete
8000 complete
8010 complete
8020 complete
8030 complete
8040 complete
8050 complete
8060 complete
8070 complete
8080 complete
8090 complete
8100 complete
8110 complete
8120 complete
8130 complete
8140 complete
8150 complete
8160 complete
8170 complete
8180 complete
8190 complete
8200 complete
8210 complete
8220 complete
8230 complete
8240 complete
8250 complete
8260 complete
8270 complete
8280 complete
8290 complete
8300 complete
8310 complete
8320 complete
8330 complete
8340 complete
8350 complete
8360 complete
8370 complete
8380 complete
8390 complete
8400 complete
8410 complete
8420 complete
8430 complete
8440 complete
8450 complete
8460 complete
8470 complete
8480 complete
8490 complete
8500 complete
8510 complete
8520 complete
8530 complete
8540 complete
8550 complete
8560 complete
8570 complete
8580 complete
8590 complete
8600 complete
8610 complete
8620 complete
8630 complete
8640 complete
8650 complete
8660 complete
8670 complete
8680 complete
8690 complete
8700 complete
8710 complete
8720 complete
8730 complete
8740 complete
8750 complete
8760 complete
8770 complete
8780 complete
8790 complete
8800 complete
8810 complete
8820 complete
8830 complete
8840 complete
8850 complete
8860 complete
8870 complete
8880 complete
8890 complete
8900 complete
8910 complete
8920 complete
8930 complete
8940 complete
8950 complete
8960 complete
8970 complete
8980 complete
8990 complete
9000 complete
9010 complete
9020 complete
9030 complete
9040 complete
9050 complete
9060 complete
9070 complete
9080 complete
9090 complete
9100 complete
9110 complete
9120 complete
9130 complete
9140 complete
9150 complete
9160 complete
9170 complete
9180 complete
9190 complete
9200 complete
9210 complete
9220 complete
9230 complete
9240 complete
9250 complete
9260 complete
9270 complete
9280 complete
9290 complete
9300 complete
9310 complete
9311 images
... completed in 2 min 5 sec
... using factorlist 1-20
... inserting clustering parameters into database
!!! WARNING: directory 'cluster' already exists.
... Creating dendrogram file: cluster/dendrogramdoc1-20.spi
Load average is high 12.87
executing command: ('CL HC', 'coran/corandata_IMC', '1-20')
Load average is high 12.0
executing command: ('5', 'T', '2.9311', 'cluster/dendrogram.ps', 'Y', 'cluster/dendrogramdoc1-20')
waiting for spider....................
SPIDER completed in 1 hr 15 min
pstopnm: Warning: no %%BoundingBox statement in the input or command line.
Will use defaults
pstopnm: Writing ppmraw file

============================
processing class averages for 96 classes
============================

... Using the hierarch clustering method

\__`O O'__/ SPIDER -- COPYRIGHT
,__xXXXx___ HEALTH RESEARCH INC., ALBANY, NY.
__xXXXx__
/ /xxx\ \ VERSION: UNIX 18.10 ISSUED: 03/23/2010
/ \ DATE: 23-NOV-2016 AT 12:55:45

**** SPIDER NORMAL STOP ****
finding threshold<<<<<<<<><>>>>>Load average is high 12.44
executing command: ('CL HE', 0.0081701925682097845, 'cluster/dendrogramdoc1-20', 'cluster/classdoc_16nov23l38_****')
delete existing filescreate 97 class averages.................................................................................................waiting for spider
SPIDER completed in 32 min 52 sec
EMAN: proc2d cluster/classavgstack_16nov23l38_096.spi cluster/classavgstack_16nov23l38_096.hed
EMAN: proc2d cluster/classvarstack_16nov23l38_096.spi cluster/classvarstack_16nov23l38_096.hed
... inserting clustering stack into database
Inserting particle classification data, please wait
................................................................................................ ... Completed 96 classes in 37 min 2 sec

============================
processing class averages for 193 classes
============================

... Using the hierarch clustering method

\__`O O'__/ SPIDER -- COPYRIGHT
,__xXXXx___ HEALTH RESEARCH INC., ALBANY, NY.
__xXXXx__
/ /xxx\ \ VERSION: UNIX 18.10 ISSUED: 03/23/2010
/ \ DATE: 23-NOV-2016 AT 13:32:47

**** SPIDER NORMAL STOP ****
finding threshold<<<<<<<<<><>Load average is high 12.01
executing command: ('CL HE', 0.0023207342552293364, 'cluster/dendrogramdoc1-20', 'cluster/classdoc_16nov23l38_****')
delete existing filescreate 194 class averages..................................................................................................................................................................................................waiting for spider
SPIDER completed in 29 min 39 sec
EMAN: proc2d cluster/classavgstack_16nov23l38_193.spi cluster/classavgstack_16nov23l38_193.hed
EMAN: proc2d cluster/classvarstack_16nov23l38_193.spi cluster/classvarstack_16nov23l38_193.hed
... inserting clustering stack into database
Inserting particle classification data, please wait
................................................................................................................................................................................................. ... Completed 193 classes in 35 min 16 sec

============================
processing class averages for 386 classes
============================

... Using the hierarch clustering method

\__`O O'__/ SPIDER -- COPYRIGHT
,__xXXXx___ HEALTH RESEARCH INC., ALBANY, NY.
__xXXXx__
/ /xxx\ \ VERSION: UNIX 18.10 ISSUED: 03/23/2010
/ \ DATE: 23-NOV-2016 AT 14:08:03

**** SPIDER NORMAL STOP ****
finding threshold<<<<<<<<<<><><<Load average is high 12.06
executing command: ('CL HE', 0.00069924025107510532, 'cluster/dendrogramdoc1-20', 'cluster/classdoc_16nov23l38_****')
delete existing filescreate 387 class averages...................................................................................................................................................................................................................................................................................................................................................................................................waiting for spider
SPIDER completed in 30 min 10 sec
EMAN: proc2d cluster/classavgstack_16nov23l38_386.spi cluster/classavgstack_16nov23l38_386.hed
EMAN: proc2d cluster/classvarstack_16nov23l38_386.spi cluster/classvarstack_16nov23l38_386.hed
... inserting clustering stack into database
Inserting particle classification data, please wait
.................................................................................................................................................................................................................................................................................................................................................................................................. ... Completed 386 classes in 35 min 54 sec
... Closing out function log: clusterCoran.log
... Ended at Wed, 23 Nov 2016 14:43:57
Total run time: 3 hr 6 min
... Run directory:
/gpfs/appion/waik/16nov22b/align/coran1


16 rounds for 97 classes


13 rounds for 194 classes


16 rounds for 387 classes


(3-3/3)