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Starting image 2 ( skip:8, remain:2 ) id:695438, file: 17may02a_e6f_012gr_01sq_014hl_01en-a
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|
... Pixel size: 1.2
|
|
Found 0 ctf values
|
|
!!! WARNING: no best CTF value for image 17may02a_e6f_012gr_01sq_014hl_01en-a
|
|
!!! WARNING: Defocus minimum is less than zero
|
|
Defocus search range: 1000 A to 45000 A (0.10 to 4.50 um)
|
|
... running ctf estimation at Tue May 2 13:28:47 2017
|
|
input = 17may02a_e6f_012gr_01sq_014hl_01en-a.mrc
|
|
output = 17may02a_e6f_012gr_01sq_014hl_01en-a-pow.mrc
|
|
apix = 1.2
|
|
kv = 200.0
|
|
cs = 2.7
|
|
ampcontrast = 0.1
|
|
fieldsize = 1024
|
|
resmin = 50.0
|
|
resmax = 4.0
|
|
defmin = 1000.0
|
|
defmax = 45000.0
|
|
defstep = 1000.0
|
|
known_astig = no
|
|
exhaustive_astig_search = no
|
|
restrain_astig = yes
|
|
expect_astig = 500.0
|
|
phase = yes
|
|
min_phase_shift = 0.174532925199
|
|
max_phase_shift = 2.96705972839
|
|
phase_search_step = 0.174532925199
|
|
expert_opts = no
|
|
newline =
|
|
|
|
|
|
/data/software/repo/ctffind4/4.0.16/ctffind4
|
|
17may02a_e6f_012gr_01sq_014hl_01en-a.mrc
|
|
17may02a_e6f_012gr_01sq_014hl_01en-a-pow.mrc
|
|
1.2
|
|
200.0
|
|
2.7
|
|
0.1
|
|
1024
|
|
50.0
|
|
4.0
|
|
1000.0
|
|
45000.0
|
|
1000.0
|
|
no
|
|
no
|
|
yes
|
|
500.0
|
|
yes
|
|
0.174532925199
|
|
2.96705972839
|
|
0.174532925199
|
|
no
|
|
|
|
|
|
|
|
** Welcome to CTFFind **
|
|
Version - 4.0.16
|
|
|
|
Input Mode: Batch
|
|
Date & Time: 2017-05-02 13:28:47
|
|
|
|
|
|
Copyright 2015 Howard Hughes Medical Institute. All rights reserved.
|
|
Use is subject to Janelia Farm Research Campus Software Copyright 1.1
|
|
license terms ( http://license.janelia.org/license/jfrc_copyright_1_1.html )
|
|
|
|
Input image file name
|
|
[17may02a_e6f_012gr_01sq_013hl_01en-a.mrc] : 17may02a_e6f_012gr_01sq_014hl_01en-a.mrc
|
|
Output diagnostic filename
|
|
[17may02a_e6f_012gr_01sq_013hl_01en-a-pow.mrc] : 17may02a_e6f_012gr_01sq_014hl_01en-a-pow.mrc
|
|
Pixel size [1.2] : 1.2
|
|
Acceleration voltage [200.0] : 200.0
|
|
Spherical aberration [2.7] : 2.7
|
|
Amplitude contrast [0.1] : 0.1
|
|
Size of power spectrum to compute [1024] : 1024
|
|
Minimum resolution [50.0] : 50.0
|
|
Maximum resolution [4.0] : 4.0
|
|
Minimum defocus [1000.0] : 1000.0
|
|
Maximum defocus [45000.0] : 45000.0
|
|
Defocus search step [1000.0] : 1000.0
|
|
Expected (tolerated) astigmatism [500.0] : no
|
|
|
|
Please enter a valid number!
|
|
|
|
Expected (tolerated) astigmatism [500.0] : no
|
|
|
|
Please enter a valid number!
|
|
|
|
Expected (tolerated) astigmatism [500.0] : yes
|
|
|
|
Please enter a valid number!
|
|
|
|
Expected (tolerated) astigmatism [500.0] : 500.0
|
|
Find additional phase shift? [yes] : yes
|
|
Minimum phase shift [0.174532925199] : 0.174532925199
|
|
Maximum phase shift [2.96705972839] : 2.96705972839
|
|
Phase shift search step [0.174532925199] : 0.174532925199
|
|
|
|
Summary information for file 17may02a_e6f_012gr_01sq_014hl_01en-a.mrc
|
|
Number of columns, rows, sections: 3710 3838 1
|
|
MRC data mode: 2
|
|
Bit depth: 32
|
|
Pixel size: 1.000 1.000 1.000
|
|
|
|
|
|
Working on micrograph 1 of 1
|
|
|
|
100% [==============================] done!
|
|
|
|
Estimated defocus values : 20788.59 , 20508.88 Angstroms
|
|
Estimated azimuth of astigmatism: -65.43 degrees
|
|
Additional phase shift : 1.121 (.36 pi)
|
|
Score : .09671
|
|
Thon rings with good fit up to : 3.6 Angstroms
|
|
|
|
Summary of results : 17may02a_e6f_012gr_01sq_014hl_01en-a-pow.txt
|
|
Diagnostic images : 17may02a_e6f_012gr_01sq_014hl_01en-a-pow.mrc
|
|
Detailled results, including 1D fit profiles: 17may02a_e6f_012gr_01sq_014hl_01en-a-pow_avrot.txt
|
|
Use this command to plot 1D fit profiles : ctffind_plot_results.sh 17may02a_e6f_012gr_01sq_014hl_01en-a-pow_avrot.txt
|
|
|
|
Total execution time : 1 minute and 56 seconds
|
|
2017-05-02 13:30:43 : CTFFind finished cleanly.
|
|
|
|
... ctf estimation completed in 1 min 56 sec
|
|
... reading 17may02a_e6f_012gr_01sq_014hl_01en-a-pow.txt
|
|
... reading MRC: 17may02a_e6f_012gr_01sq_014hl_01en-a-pow.mrc size:(1024, 1024) dtype:float32
|
|
... writing JPEG: 17may02a_e6f_012gr_01sq_014hl_01en-a-pow.jpg
|
|
==== Committing data to database ====
|
|
... Committing ctf parameters for 17may02a_e6f_012gr_01sq_014hl_01en-a to database
|
|
... Reading image...
|
|
[CTF param] def1: 2.051 um | def2: 2.079 um | angle: 24.6 | ampcontr 0.10 | defratio 1.014
|
|
[CTF param] additional phase shift: 64.2 degrees
|
|
Final params: def1: 2.051 um | def2: 2.079 um | angle: 24.6 | defratio 1.01
|
|
... Defocus Astig Percent Diff 0.68 -- 2.051, 2.079 um
|
|
Computing power spectra in 2048x2048 blocks........
|
|
... Compute PSD with 8 subfields and fieldsize 2048 complete in 5.11 sec
|
|
* correlation 1: 0.04181 -> contribution: 0.1303
|
|
* correlation 2: 0.03923 -> contribution: 0.1223
|
|
* correlation 3: 0.04326 -> contribution: 0.1348
|
|
* correlation 4: 0.04218 -> contribution: 0.1314
|
|
* correlation 5: 0.04049 -> contribution: 0.1262
|
|
* correlation 6: 0.03840 -> contribution: 0.1197
|
|
* correlation 7: 0.03809 -> contribution: 0.1187
|
|
* correlation 8: 0.03742 -> contribution: 0.1166
|
|
Using 8 of 8 subfields in final power spectra
|
|
... Preform a rotational average and remove spikes...
|
|
PART 1: SETUP PARAMETERS AND ELLIPTICAL AVERAGE
|
|
Resolution range for the data is 1/68.5A to 1/2.0A
|
|
... far from focus images, increasing number of extrema (100)
|
|
... Number of available peaks is 117
|
|
... setting the number of sections to default: 6
|
|
... Determine and subtract noise model
|
|
PART 2: BACKGROUND NOISE SUBTRACTION
|
|
... starting peak extension
|
|
Peak Extension Complete in 1.87 msec
|
|
PART 3: ENVELOPE NORMALIZATION
|
|
... Setting last 3 values to -3.2 (test = -3.2)
|
|
... starting peak extension
|
|
Peak Extension Complete in 1.92 msec
|
|
PART 3B: BAND-PASS FILTER
|
|
PART 4: PEAK EXTENSION
|
|
... starting peak extension
|
|
Peak Extension Complete in 1.78 msec
|
|
... starting peak extension
|
|
Peak Extension Complete in 1.79 msec
|
|
PART 5: CTF FIT AND CONFIDENCE
|
|
1/30A - 1/10A confidence is 0.989 (overfocus 0.156)
|
|
1/30A - 1/10A confidence is 0.989 (overfocus 0.156)
|
|
5 peak confidence is 0.979 (overfocus 0.066)
|
|
PART 6: CTF RESOLUTION LIMITS
|
|
[ 0.898 0.763 0.764 -0.076 0.062 0.091 0.188 0.199 0.245 0.279
|
|
0.269 0.262 0.193 0.176 0.151]
|
|
!!! WARNING: Res calc: Negative values in first 10 values
|
|
[ 0.898 0.763 0.764 -0.076 0.062 0.091 0.188 0.199 0.245 0.279
|
|
0.269 0.262 0.193 0.176 0.151]
|
|
!!! WARNING: Res calc: Negative values in first 10 values
|
|
Resolution limit is 4.01 at 0.8 and 3.56 at 0.5
|
|
PART 7: MAKE 1D PLOT SUMMARY FIGURE
|
|
... Saving 1D graph to file 17may02a_e6f_012gr_01sq_014hl_01en-a-plots.png
|
|
PART 8: NORMALIZE THE 2D IMAGE
|
|
... converting 1d arrays to 2d and normalizing
|
|
.................. ... 2d image normalization complete
|
|
... Resolution ring of the edge of the image 2.84
|
|
... Resolution ring of 25th valley 6.400
|
|
(5.0, 4.0086544986979424, 3.5551356021786837, 6.3996785830426726)
|
|
... Final resolution ring of 2D Plot: 4.621
|
|
PART 9: DRAW THE 2D POWERSPEC IMAGE
|
|
... Saving 2D powerspectra to file: 17may02a_e6f_012gr_01sq_014hl_01en-a-powerspec.jpg
|
|
Full CTF display makeCtfImages routine complete in 16.45 sec
|
|
17may02a_e6f_012gr_01sq_014hl_01en-a-powerspec.jpg
|
|
[CTF run] method: unknown | runname ctffind4run1
|
|
[CTF param] def1: 2.051 um | def2: 2.079 um | angle: 24.6 | ampcontr 0.10 | defratio 1.014
|
|
[CTF param] additional phase shift: 64.2 degrees
|
|
[CTF stats] conf_30-10: 0.989 | conf_5peak: 0.979 | res_0.8: 4.0A | res_0.5 3.6A
|
|
|
|
SUMMARY: ctffind4
|
|
------------------------------------------
|
|
TIME: 2 min 13 sec
|
|
AVG TIME: 1.5 +/- 0.55 min
|
|
(- REMAINING TIME: 2 min 3 sec for 1 images -)
|
|
------------------------------------------
|
|
|
|
Starting image 3 ( skip:8, remain:1 ) id:695440, file: 17may02a_e6f_012gr_01sq_015hl_01en-a
|
|
... Pixel size: 1.2
|
|
Found 0 ctf values
|
|
!!! WARNING: no best CTF value for image 17may02a_e6f_012gr_01sq_015hl_01en-a
|
|
!!! WARNING: Defocus minimum is less than zero
|
|
Defocus search range: 1000 A to 45000 A (0.10 to 4.50 um)
|
|
... running ctf estimation at Tue May 2 13:31:00 2017
|
|
input = 17may02a_e6f_012gr_01sq_015hl_01en-a.mrc
|
|
output = 17may02a_e6f_012gr_01sq_015hl_01en-a-pow.mrc
|
|
apix = 1.2
|
|
kv = 200.0
|
|
cs = 2.7
|
|
ampcontrast = 0.1
|
|
fieldsize = 1024
|
|
resmin = 50.0
|
|
resmax = 4.0
|
|
defmin = 1000.0
|
|
defmax = 45000.0
|
|
defstep = 1000.0
|
|
known_astig = no
|
|
exhaustive_astig_search = no
|
|
restrain_astig = yes
|
|
expect_astig = 500.0
|
|
phase = yes
|
|
min_phase_shift = 0.174532925199
|
|
max_phase_shift = 2.96705972839
|
|
phase_search_step = 0.174532925199
|
|
expert_opts = no
|
|
newline =
|
|
|
|
|
|
/data/software/repo/ctffind4/4.0.16/ctffind4
|
|
17may02a_e6f_012gr_01sq_015hl_01en-a.mrc
|
|
17may02a_e6f_012gr_01sq_015hl_01en-a-pow.mrc
|
|
1.2
|
|
200.0
|
|
2.7
|
|
0.1
|
|
1024
|
|
50.0
|
|
4.0
|
|
1000.0
|
|
45000.0
|
|
1000.0
|
|
no
|
|
no
|
|
yes
|
|
500.0
|
|
yes
|
|
0.174532925199
|
|
2.96705972839
|
|
0.174532925199
|
|
no
|
|
|
|
|
|
|
|
** Welcome to CTFFind **
|
|
Version - 4.0.16
|
|
|
|
Input Mode: Batch
|
|
Date & Time: 2017-05-02 13:31:00
|
|
|
|
|
|
Copyright 2015 Howard Hughes Medical Institute. All rights reserved.
|
|
Use is subject to Janelia Farm Research Campus Software Copyright 1.1
|
|
license terms ( http://license.janelia.org/license/jfrc_copyright_1_1.html )
|
|
|
|
Input image file name
|
|
[17may02a_e6f_012gr_01sq_014hl_01en-a.mrc] : 17may02a_e6f_012gr_01sq_015hl_01en-a.mrc
|
|
Output diagnostic filename
|
|
[17may02a_e6f_012gr_01sq_014hl_01en-a-pow.mrc] : 17may02a_e6f_012gr_01sq_015hl_01en-a-pow.mrc
|
|
Pixel size [1.2] : 1.2
|
|
Acceleration voltage [200.0] : 200.0
|
|
Spherical aberration [2.7] : 2.7
|
|
Amplitude contrast [0.1] : 0.1
|
|
Size of power spectrum to compute [1024] : 1024
|
|
Minimum resolution [50.0] : 50.0
|
|
Maximum resolution [4.0] : 4.0
|
|
Minimum defocus [1000.0] : 1000.0
|
|
Maximum defocus [45000.0] : 45000.0
|
|
Defocus search step [1000.0] : 1000.0
|
|
Expected (tolerated) astigmatism [500.0] : no
|
|
|
|
Please enter a valid number!
|
|
|
|
Expected (tolerated) astigmatism [500.0] : no
|
|
|
|
Please enter a valid number!
|
|
|
|
Expected (tolerated) astigmatism [500.0] : yes
|
|
|
|
Please enter a valid number!
|
|
|
|
Expected (tolerated) astigmatism [500.0] : 500.0
|
|
Find additional phase shift? [yes] : yes
|
|
Minimum phase shift [0.174532925199] : 0.174532925199
|
|
Maximum phase shift [2.96705972839] : 2.96705972839
|
|
Phase shift search step [0.174532925199] : 0.174532925199
|
|
|
|
Summary information for file 17may02a_e6f_012gr_01sq_015hl_01en-a.mrc
|
|
Number of columns, rows, sections: 3710 3838 1
|
|
MRC data mode: 2
|
|
Bit depth: 32
|
|
Pixel size: 1.000 1.000 1.000
|
|
|
|
|
|
Working on micrograph 1 of 1
|
|
|
|
100% [==============================] done!
|
|
|
|
Estimated defocus values : 22200.57 , 21926.01 Angstroms
|
|
Estimated azimuth of astigmatism: -54.36 degrees
|
|
Additional phase shift : 1.489 (.47 pi)
|
|
Score : .09369
|
|
Thon rings with good fit up to : 3.9 Angstroms
|
|
|
|
Summary of results : 17may02a_e6f_012gr_01sq_015hl_01en-a-pow.txt
|
|
Diagnostic images : 17may02a_e6f_012gr_01sq_015hl_01en-a-pow.mrc
|
|
Detailled results, including 1D fit profiles: 17may02a_e6f_012gr_01sq_015hl_01en-a-pow_avrot.txt
|
|
Use this command to plot 1D fit profiles : ctffind_plot_results.sh 17may02a_e6f_012gr_01sq_015hl_01en-a-pow_avrot.txt
|
|
|
|
Total execution time : 1 minute and 57 seconds
|
|
2017-05-02 13:32:57 : CTFFind finished cleanly.
|
|
|
|
... ctf estimation completed in 1 min 58 sec
|
|
... reading 17may02a_e6f_012gr_01sq_015hl_01en-a-pow.txt
|
|
... reading MRC: 17may02a_e6f_012gr_01sq_015hl_01en-a-pow.mrc size:(1024, 1024) dtype:float32
|
|
... writing JPEG: 17may02a_e6f_012gr_01sq_015hl_01en-a-pow.jpg
|
|
==== Committing data to database ====
|
|
... Committing ctf parameters for 17may02a_e6f_012gr_01sq_015hl_01en-a to database
|
|
... Reading image...
|
|
[CTF param] def1: 2.193 um | def2: 2.220 um | angle: 35.6 | ampcontr 0.10 | defratio 1.013
|
|
[CTF param] additional phase shift: 85.3 degrees
|
|
Final params: def1: 2.193 um | def2: 2.220 um | angle: 35.6 | defratio 1.01
|
|
... Defocus Astig Percent Diff 0.62 -- 2.193, 2.220 um
|
|
Computing power spectra in 2048x2048 blocks........
|
|
... Compute PSD with 8 subfields and fieldsize 2048 complete in 5.0 sec
|
|
* correlation 1: 0.03175 -> contribution: 0.1312
|
|
* correlation 2: 0.03356 -> contribution: 0.1386
|
|
* correlation 3: 0.02944 -> contribution: 0.1216
|
|
* correlation 4: 0.02893 -> contribution: 0.1195
|
|
* correlation 5: 0.02790 -> contribution: 0.1153
|
|
* correlation 6: 0.02753 -> contribution: 0.1137
|
|
* correlation 7: 0.03229 -> contribution: 0.1334
|
|
* correlation 8: 0.03070 -> contribution: 0.1268
|
|
Using 8 of 8 subfields in final power spectra
|
|
... Preform a rotational average and remove spikes...
|
|
PART 1: SETUP PARAMETERS AND ELLIPTICAL AVERAGE
|
|
ERROR
|
|
!!! WARNING: Logging images failing CtfdisplayTool to /data/microscopes/appion/17may02a/ctf/ctffind4run1/failed_ctfdisplay_images.txt
|
|
[CTF run] method: unknown | runname ctffind4run1
|
|
[CTF param] def1: 2.193 um | def2: 2.220 um | angle: 35.6 | ampcontr 0.10 | defratio 1.013
|
|
[CTF param] additional phase shift: 85.3 degrees
|
|
|
|
SUMMARY: ctffind4
|
|
------------------------------------------
|
|
TIME: 2 min 7 sec
|
|
AVG TIME: 1.55 +/- 0.55 min
|
|
------------------------------------------
|
|
!!! WARNING: skipped total of 8 images.
|
|
... to process them again, remove 'continue' option and run ctffind4 again.
|
|
... Finished all images, checking for more
|
|
|
|
... Querying database for preset 'en-a' images from session '17may02a' ...
|
|
... 14 images recevied in 13.65 msec
|
|
... Found 14 images in 13.72 msec
|
|
... Remove processed images
|
|
skipping processed images
|
|
............
|
|
... finished skipping in 14.07 msec
|
|
|
|
!!! WARNING: skipped 12 of 14 images
|
|
... [[ 0 no reprocess | 0 rejected | 0 wrong tilt | 12 in donedict ]]
|
|
... Process images old to new
|
|
|
|
Beginning Main Loop
|
|
|
|
Starting image 0 ( skip:12, remain:2 ) id:695442, file: 17may02a_e6f_012gr_01sq_016hl_01en-a
|
|
... Pixel size: 1.2
|
|
Found 0 ctf values
|
|
!!! WARNING: no best CTF value for image 17may02a_e6f_012gr_01sq_016hl_01en-a
|
|
!!! WARNING: Defocus minimum is less than zero
|
|
Defocus search range: 1000 A to 45000 A (0.10 to 4.50 um)
|
|
... running ctf estimation at Tue May 2 13:33:06 2017
|
|
input = 17may02a_e6f_012gr_01sq_016hl_01en-a.mrc
|
|
output = 17may02a_e6f_012gr_01sq_016hl_01en-a-pow.mrc
|
|
apix = 1.2
|
|
kv = 200.0
|
|
cs = 2.7
|
|
ampcontrast = 0.1
|
|
fieldsize = 1024
|
|
resmin = 50.0
|
|
resmax = 4.0
|
|
defmin = 1000.0
|
|
defmax = 45000.0
|
|
defstep = 1000.0
|
|
known_astig = no
|
|
exhaustive_astig_search = no
|
|
restrain_astig = yes
|
|
expect_astig = 500.0
|
|
phase = yes
|
|
min_phase_shift = 0.174532925199
|
|
max_phase_shift = 2.96705972839
|
|
phase_search_step = 0.174532925199
|
|
expert_opts = no
|
|
newline =
|
|
|
|
|
|
/data/software/repo/ctffind4/4.0.16/ctffind4
|
|
17may02a_e6f_012gr_01sq_016hl_01en-a.mrc
|
|
17may02a_e6f_012gr_01sq_016hl_01en-a-pow.mrc
|
|
1.2
|
|
200.0
|
|
2.7
|
|
0.1
|
|
1024
|
|
50.0
|
|
4.0
|
|
1000.0
|
|
45000.0
|
|
1000.0
|
|
no
|
|
no
|
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yes
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500.0
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yes
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0.174532925199
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2.96705972839
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0.174532925199
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no
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** Welcome to CTFFind **
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Version - 4.0.16
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Input Mode: Batch
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Date & Time: 2017-05-02 13:33:06
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Copyright 2015 Howard Hughes Medical Institute. All rights reserved.
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Use is subject to Janelia Farm Research Campus Software Copyright 1.1
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license terms ( http://license.janelia.org/license/jfrc_copyright_1_1.html )
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Input image file name
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[17may02a_e6f_012gr_01sq_015hl_01en-a.mrc] : 17may02a_e6f_012gr_01sq_016hl_01en-a.mrc
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Output diagnostic filename
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[17may02a_e6f_012gr_01sq_015hl_01en-a-pow.mrc] : 17may02a_e6f_012gr_01sq_016hl_01en-a-pow.mrc
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Pixel size [1.2] : 1.2
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Acceleration voltage [200.0] : 200.0
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Spherical aberration [2.7] : 2.7
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Amplitude contrast [0.1] : 0.1
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Size of power spectrum to compute [1024] : 1024
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Minimum resolution [50.0] : 50.0
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Maximum resolution [4.0] : 4.0
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Minimum defocus [1000.0] : 1000.0
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Maximum defocus [45000.0] : 45000.0
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Defocus search step [1000.0] : 1000.0
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Expected (tolerated) astigmatism [500.0] : no
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Please enter a valid number!
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Expected (tolerated) astigmatism [500.0] : no
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Please enter a valid number!
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Expected (tolerated) astigmatism [500.0] : yes
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Please enter a valid number!
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Expected (tolerated) astigmatism [500.0] : 500.0
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Find additional phase shift? [yes] : yes
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Minimum phase shift [0.174532925199] : 0.174532925199
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Maximum phase shift [2.96705972839] : 2.96705972839
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Phase shift search step [0.174532925199] : 0.174532925199
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Summary information for file 17may02a_e6f_012gr_01sq_016hl_01en-a.mrc
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Number of columns, rows, sections: 3710 3838 1
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MRC data mode: 2
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Bit depth: 32
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Pixel size: 1.000 1.000 1.000
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Working on micrograph 1 of 1
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100% [==============================] done!
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Estimated defocus values : 23427.16 , 23135.30 Angstroms
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Estimated azimuth of astigmatism: -81.92 degrees
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Additional phase shift : 1.643 (.52 pi)
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Score : .08659
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Thon rings with good fit up to : 17.1 Angstroms
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Summary of results : 17may02a_e6f_012gr_01sq_016hl_01en-a-pow.txt
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Diagnostic images : 17may02a_e6f_012gr_01sq_016hl_01en-a-pow.mrc
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Detailled results, including 1D fit profiles: 17may02a_e6f_012gr_01sq_016hl_01en-a-pow_avrot.txt
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Use this command to plot 1D fit profiles : ctffind_plot_results.sh 17may02a_e6f_012gr_01sq_016hl_01en-a-pow_avrot.txt
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Total execution time : 1 minute and 56 seconds
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2017-05-02 13:35:04 : CTFFind finished cleanly.
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... ctf estimation completed in 1 min 58 sec
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... reading 17may02a_e6f_012gr_01sq_016hl_01en-a-pow.txt
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... reading MRC: 17may02a_e6f_012gr_01sq_016hl_01en-a-pow.mrc size:(1024, 1024) dtype:float32
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... writing JPEG: 17may02a_e6f_012gr_01sq_016hl_01en-a-pow.jpg
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==== Committing data to database ====
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... Committing ctf parameters for 17may02a_e6f_012gr_01sq_016hl_01en-a to database
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... Reading image...
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[CTF param] def1: 2.314 um | def2: 2.343 um | angle: 8.1 | ampcontr 0.10 | defratio 1.013
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[CTF param] additional phase shift: 94.1 degrees
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Final params: def1: 2.314 um | def2: 2.343 um | angle: 8.1 | defratio 1.01
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... Defocus Astig Percent Diff 0.63 -- 2.314, 2.343 um
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Computing power spectra in 2048x2048 blocks........
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... Compute PSD with 8 subfields and fieldsize 2048 complete in 5.11 sec
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* correlation 1: 0.02584 -> contribution: 0.1422
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* correlation 2: 0.02471 -> contribution: 0.1359
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* correlation 3: 0.02521 -> contribution: 0.1387
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* correlation 4: 0.01857 -> contribution: 0.1022
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* correlation 5: 0.02517 -> contribution: 0.1385
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* correlation 6: 0.02021 -> contribution: 0.1112
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* correlation 7: 0.02322 -> contribution: 0.1278
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* correlation 8: 0.01885 -> contribution: 0.1037
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Using 8 of 8 subfields in final power spectra
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... Preform a rotational average and remove spikes...
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PART 1: SETUP PARAMETERS AND ELLIPTICAL AVERAGE
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ERROR
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!!! WARNING: Logging images failing CtfdisplayTool to /data/microscopes/appion/17may02a/ctf/ctffind4run1/failed_ctfdisplay_images.txt
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[CTF run] method: unknown | runname ctffind4run1
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[CTF param] def1: 2.314 um | def2: 2.343 um | angle: 8.1 | ampcontr 0.10 | defratio 1.013
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[CTF param] additional phase shift: 94.1 degrees
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SUMMARY: ctffind4
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------------------------------------------
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TIME: 2 min 7 sec
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AVG TIME: 1.59 +/- 0.55 min
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(- REMAINING TIME: 2 min 8 sec for 1 images -)
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------------------------------------------
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