error running applications
Added by Nancy Horton over 12 years ago
I get errors like this when I try to run an alignment:
ERROR: ERROR: Could not create run directory on goby.scripps.edu: Error executing over ssh on host: goby.scripps.edu sending command: mkdir -p /ami/exdata/appion/11feb17h/align/refbased9; username: nhorton Error Message: Can not login to goby.scripps.edu. Unknown login authentication method.
Also, I've had an alignment running for 13 days - that seems like a very long time - the log file isn't very informative about what the issue is. The job is:
Job: refbased8.appionsub.job (ID: 205)
time: 2012-04-19 13:49:28
runtime: 13 days, 6 hours, 35 mins
path: /ami/exdata/appion/11feb17h/align/refbased8
cluster: goby.scripps.edu
PBS ID: 20952
Replies (1)
RE: error running applications - Added by Amber Herold over 12 years ago
Hi Nancy,
Regarding the first issue, we just upgraded the Appion Installation yesterday to version 2.2, and the config file was missing a parameter. We are doing some more testing on the new installation today, I'll let you know when it is complete so you don't run into any more config issues.
We are looking into the second issue as well.
Thanks,
Amber