Drift-alignment Binning Issue
Added by Sebastian Scherer almost 10 years ago
Hi
We recorded images on a K2 in super-resolution mode and are now drift-correcting them with Yifan's tool via Appion.
I want to apply a 2x2 binning while drift-correcting the images. Therefore I set the binning option in Appion to 2.
Somehow the ed-a image has the correct (binned) image size in the database but when looking at the MRC-file the image size is still ~8k.
Checking the logs showed that the binning is not forwarded to dosefdrift_gpu, i.e. -bin 1 for Yifan's Software.
I quickly checked your code and it seams that you are not using the -bin option in dosefdrift_gpu!??
Is this a bug or am I misusing the pipeline?
Best,
Sebastian
Replies (2)
RE: Drift-alignment Binning Issue - Added by Anchi Cheng almost 10 years ago
Yes, we found that bug a few days ago as well. See Issue #2994. I have fixed it but no local user has confirmed that it works yet, but I have good confidence.
You can use svn update to get it or just add the lines at your installation.
Please keep in mind, though that all of our servers including this one will be down in 8 hours as we are moving across the country. Do it now or you will have to wait until January.
RE: Drift-alignment Binning Issue - Added by Sebastian Scherer almost 10 years ago
Hi Anchi
Thanks a lot for the reply and the hint.
I did it now ;)
It works fine!
So an external user confirms that it is running now...
All the best with your moving and happy Xmas,
Sebastian