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Bug #1094

closed

CTF report on image report page

Added by Anna-Clare Milazzo almost 14 years ago. Updated almost 14 years ago.

Status:
Closed
Priority:
Normal
Category:
-
Target version:
-
Start date:
12/16/2010
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 2.1.0
Show in known bugs:
No
Workaround:

Description

CTF report does not show up on image report page for CTF find or ACE2 results. When you click on the "i" button in the image viewer to generate an image report the results of CTF estimation runs should be displayed and it says there is not CTF data likely because it only works for ACE1. Bridget and Clint think that it should display any CTF estimation information that has been obtained and put into the DB.

Actions #1

Updated by Eric Hou almost 14 years ago

  • Status changed from New to Assigned

Can you give me an example session or an url.

Thanks.

Eric

Actions #2

Updated by Anna-Clare Milazzo almost 14 years ago

Sure sorry about that and we can chat more about this in person. Here's some links:

http://cronus3.scripps.edu/~amiguest2/myamiweb/imgreport.php?id=1400177&preset=ed

If you look at the bottom of the page it says there is no CTF information but there is lots of CTF information in Appion for the images in this session: http://cronus3.scripps.edu/~amiguest2/myamiweb/processing/ctfreport.php?expId=8304

So I think the image report page is supposed to reflect what is in the data base for the CTF estimation runs.

Thanks!

Actions #3

Updated by Eric Hou almost 14 years ago

Oh. good.
This is really an issue and we should fit it as soon as possible.

Thanks.
Eric

Actions #4

Updated by Eric Hou almost 14 years ago

After fixed the database sql error and image location path. Right now it will show CTF result for each image for ACE2 and CTFFind run.
There suppose have image pair for ACE2 run, but I still need to make the second image to show up in the result page.

Thanks.

Eric

Actions #5

Updated by Eric Hou almost 14 years ago

Hi Anna!
I added the second graphic in the report page. Could you take a look to see if everything is ok.

Thanks.

Eric

Actions #6

Updated by Eric Hou almost 14 years ago

  • Assignee changed from Eric Hou to Anna-Clare Milazzo
Actions #7

Updated by Anna-Clare Milazzo almost 14 years ago

Hi Eric,

Looks great for this data set but there is one thing that doesn't work for a data set that used the program ACE (instead of ACE2 or ctffind). For example, if you look at the session:

  1. Project: Milazzo - DDD test (262)
  2. Session: 10oct23a - binned by 2 test Polara images 25e/A

I used ACE on that data and there is a missing image of the two graphs it should display on the image report page. (If you look at the images in the image viewer and click on the ACE button and select "Graph2" that is the graph that is missing on the image report page). Feel free to stop by and I can better explain it.

--Anna

Actions #8

Updated by Anna-Clare Milazzo almost 14 years ago

  • Status changed from Assigned to Closed

All fixed with ACE graphs now showing up. Thanks Eric!

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