Bug #1164
closed
Improper input parameters error during tomography data collection
Added by Anchi Cheng almost 14 years ago.
Updated about 11 years ago.
Category:
Leginon subsystem
Affected Version:
Appion/Leginon 2.1.1
Description
Reported by Scott Stagg
Logger in Leginon says:
Failed to process tomo target: Improper input paramaters
- Assignee changed from Anchi Cheng to Jim Pulokas
The error comes from scipy.optimize.leastsq function where it gave the exception when 6 out of the 8 data input arrays (tilt series of limited tilt range in this case) are empty.
r15317 avoids this by popping the empty data and parameters from the input to the function. Tested fine in simulation. Will test on real scope before merge to branches.
r15318 are simulator enhancement in collectionsimu.py used to debug this and some minor bug fix noticed during thie in tomographysimu.py. These will not need to be merged to branches
Real testing:
Do this in Leginon Tomography application
1. Collect at least 6 tilt series that only cover minimal tilt angle range.
2. Collect a tilt series up to much higher tilts so that it has at least 4 higher tilts not found in the earlier tilt series.
3. The old code would give error but the new one won't and could complete the tilt series.
- Assignee changed from Jim Pulokas to Anchi Cheng
have not seen problem for a long time.
- Status changed from Assigned to Closed
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