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Bug #11791

closed

autofinder of the mosaic image starts before the last tile is added to the mosaic image display

Added by Anchi Cheng almost 3 years ago. Updated about 2 years ago.

Status:
Closed
Priority:
Normal
Assignee:
Anchi Cheng
Category:
-
Target version:
Appion/Leginon 3.6
Start date:
01/03/2022
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 3.6
Show in known bugs:
No
Workaround:

Description

createMosaicImage takes time to complete but it is not in the lock. Got this error:

  File "/Users/acheng/myami/leginon/mosaictargetfinder.py", line 1112, in findSquareBlobs
    method='biggest',
  File "/Users/acheng/myami/pyami/imagefun.py", line 390, in find_blobs
    blobs = scipyblobs(image,tmpmask)
  File "/Users/acheng/myami/pyami/imagefun.py", line 315, in scipyblobs
    centers = scipy.ndimage.center_of_mass(im,labels,range(1,n+1))
  File "/Users/acheng/miniconda/lib/python2.7/site-packages/scipy/ndimage/measurements.py", line 1267, in center_of_mass
    normalizer = sum(input, labels, index)
  File "/Users/acheng/miniconda/lib/python2.7/site-packages/scipy/ndimage/measurements.py", line 574, in sum
    count, sum = _stats(input, labels, index)
  File "/Users/acheng/miniconda/lib/python2.7/site-packages/scipy/ndimage/measurements.py", line 475, in _stats
    input, labels = numpy.broadcast_arrays(input, labels)
  File "/Users/acheng/miniconda/lib/python2.7/site-packages/numpy/lib/stride_tricks.py", line 94, in broadcast_arrays
    "incompatible dimensions on axis %r." % (axis,))
ValueError: shape mismatch: two or more arrays have incompatible dimensions on axis 0.
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