Bug #1282
closedemanJobGen.php outfullpath comes out wrong in the job file
0%
Description
got in jobfile:
outfullpath /ami/data00/appion/11feb24d/reconemanrecon11/
beacause default appion outdir is /ami/data00/appion/11feb24d/recon
Updated by Anchi Cheng over 13 years ago
- Category changed from User Management to Web interface
- Assignee changed from Anchi Cheng to Eric Hou
- Target version set to Appion/Leginon 2.2.0
r15610 fix this.
Testing:
1. make sure your cluster.php is changed according to default_cluster.php.template in r15610.
2. goto myamiweb/processing/emanJobGen.php?expId=8525
3. select a stack with more than 1000 particles and a model
4. use default parameter for iteration 1 and the cluster that the change has been made.
5. check the jobfile created. The part says #outfullpath should be correct. If it is a remote cluster like garibaldi, the final rsync that copies the results back should also have the right path.
Updated by Eric Hou over 13 years ago
- Assignee changed from Eric Hou to Anchi Cheng
Updated by Anchi Cheng over 13 years ago
- Status changed from Assigned to In Code Review
- Assignee changed from Anchi Cheng to Amber Herold
Updated by Anchi Cheng over 13 years ago
- Affected Version changed from Appion/Leginon 2.1.0 to Appion/Leginon 2.2.0 (trunk)
Found that this a general problem and that formatEndPath function is defined at multiple places.
The new inc/cluster.inc did not use formatEndPath and causes path problem if not DEFAULT_APPION_PATH not end with '/'.
Move the function into particledata.inc since all of them call it except the ones derived from default_cluster.php.template.
These are committed as r15882
Updated by Amber Herold over 13 years ago
- Status changed from In Code Review to In Test
Updated by Amber Herold almost 13 years ago
- Status changed from In Test to Closed