Appion

This seems similar to #1225, as viper icos symmetry does not work, but even using a large C1 symetry model had the same stalling issue. Upload of other smaller models works fine. There are no errors reported, here is the apChimSnapshot.log

======================
Running apChimSnapshot
======================

using chimera silhouette
Chimera version: alpha version 1 build 2509 2008/05/01
Environmental data: 
export CHIMCOLORS=0.3:0.0:0.5,None,0.0:0.1:0.5
export CHIMSILHOUETTE=true
export CHIMVOL=/ami/data00/appion/11sep29a/models/accepted/file_11oct04l38/upload-3DDX_40A_256-11oct04l38.mrc
export CHIMTYPE=snapshot
export CHIMIMGSIZE=1024
export CHIMZOOM=1.0
export CHIMERA=/export/sw/chimera
export CHIMCONTOUR=1.5
export CHIMSYM=icos
rendering volume
Opening volume type: mrc file: /ami/data00/appion/11sep29a/models/accepted/file_11oct04l38/upload-3DDX_40A_256-11oct04l38.mrc
Setting zoom
using old Chimera radial method
Contour 1.50 is too big, no surface is shown
Contour 1.35 is too big, no surface is shown
Contour 1.22 is too big, no surface is shown
Contour 1.09 is too big, no surface is shown
Contour 0.98 is too big, no surface is shown
Contour 0.89 is too big, no surface is shown
Contour 0.80 is too big, no surface is shown
Contour 0.72 is too big, no surface is shown
Contour 0.65 is too big, no surface is shown
Contour 0.58 is too big, no surface is shown
Contour 0.52 is too big, no surface is shown
Contour 0.47 is too big, no surface is shown
Contour 0.42 is too big, no surface is shown
Contour 0.38 is too big, no surface is shown
Contour 0.34 is too big, no surface is shown
Contour 0.31 is too big, no surface is shown
Contour 0.28 is too big, no surface is shown
Contour 0.25 is too big, no surface is shown
Contour 0.23 is too big, no surface is shown
Contour 0.20 is too big, no surface is shown
Contour 0.18 is too big, no surface is shown
found r_max value of 339.806
set view size to 373.786
Chimera numeric version: 1.250900
Skipping scale bar
Saving OBJ file: /ami/data00/appion/11sep29a/models/accepted/file_11oct04l38/upload-3DDX_40A_256-11oct04l38.obj
export format OBJ /ami/data00/appion/11sep29a/models/accepted/file_11oct04l38/upload-3DDX_40A_256-11oct04l38.obj
Saved OBJ file: /ami/data00/appion/11sep29a/models/accepted/file_11oct04l38/upload-3DDX_40A_256-11oct04l38.obj
Converting OBJ file: /ami/data00/appion/11sep29a/models/accepted/file_11oct04l38/upload-3DDX_40A_256-11oct04l38.obj
Converted OBJ file: /ami/data00/appion/11sep29a/models/accepted/file_11oct04l38/upload-3DDX_40A_256-11oct04l38.obj
snapshot_icosahedral
Hide all dust particles less than 10 voxels in size
Hid 30 of 30 connected surface components having volume < 10.0
Color radially
170.596,339.806
rgbcolor0 = 0.3, 0.0, 0.5, 1.0
rgbcolor1 = 0.8, 0.8, 0.8, 1.0
rgbcolor2 = 0.0, 0.1, 0.5, 1.0
Saving image: /ami/data00/appion/11sep29a/models/accepted/file_11oct04l38/upload-3DDX_40A_256-11oct04l38.mrc.1.png
Success, saved image: /ami/data00/appion/11sep29a/models/accepted/file_11oct04l38/upload-3DDX_40A_256-11oct04l38.mrc.1.png
turn: down 3-fold axis
turn y 37.377
Saving image: /ami/data00/appion/11sep29a/models/accepted/file_11oct04l38/upload-3DDX_40A_256-11oct04l38.mrc.2.png
Success, saved image: /ami/data00/appion/11sep29a/models/accepted/file_11oct04l38/upload-3DDX_40A_256-11oct04l38.mrc.2.png
turn: viper orientation (2 fold)
turn y 20.906
Saving image: /ami/data00/appion/11sep29a/models/accepted/file_11oct04l38/upload-3DDX_40A_256-11oct04l38.mrc.3.png
Success, saved image: /ami/data00/appion/11sep29a/models/accepted/file_11oct04l38/upload-3DDX_40A_256-11oct04l38.mrc.3.png
turn: get clipped view
mclip #0 coords screen axis z
ac cc

For now, I have commented out running chimera to complete the upload successfully.
In appionlib/apChimera.py, comment out lines 210 and 215 which call "runChimeraScript(chimsnappath, xvfb=xvfb)".

Anyone have any thoughts on what the issue is?