Bug #14559: numpy 1.20 deprecated numpy.bool data type - Leginon - Electron Microscopy Group

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Bug #14559

closed

numpy 1.20 deprecated numpy.bool data type

Added by Anchi Cheng over 1 year ago. Updated 4 months ago.

Status:

Closed

Priority:

Normal

Assignee:

cesar mena

Category:

Target version:

Appion/Leginon 3.7

Start date:

03/29/2023

Due date:

% Done:

Estimated time:

Affected Version:

Appion/Leginon 4.0

Show in known bugs:

Workaround:

Description

There may be multiple places affected. I found this in pyami/mrc.py

For now, restrict matplotlib version to 3.6 can avoid this.

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Updated by Anchi Cheng over 1 year ago

Looks like not many files contained numpy.bool and numpy 1.6 which is on python 2.6 already has numpy.bool_ as data type. I change the codes that uses numpy.bool to numpy.bool_.

There are other deprecated numpy types such as unspecified numpy.int in myami that need to be resolved before we can use numpy 1.20 and above.

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Updated by Anchi Cheng over 1 year ago

Project changed from Appion to Leginon
Status changed from New to In Code Review
Assignee set to cesar mena
Target version set to Appion/Leginon 3.7

Added also changes to numpy.int, numpy.float, numpy.complex. Except the ones that I can fairly guessed the length, I left them platform defined.
Tested with myami-python3

Cesar, if you have time please take a look to see if my assignments look o.k.

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