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Bug #1703

closed

Manual picker not working for me

Added by Rebecca Taurog over 12 years ago. Updated over 10 years ago.

Status:
Won't Fix or Won't Do
Priority:
Normal
Assignee:
Amber Herold
Category:
unknown
Target version:
-
Start date:
04/10/2012
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 2.1.0
Show in known bugs:
No
Workaround:

Description

I was using the betamyamiweb version of Appion to do manual edits of template picks. Below is the output:

rtaurog@amibox03:/home/rtaurog <2> /opt/myamisnap/bin/appion manualpicker.py --projectid=292 --preset=en --session=12mar30a --runname=manrun2 --rundir=/ami/data00/appion/12mar30a/extract/manrun2 --no-rejects --no-wait --commit --continue --median=2 --lowpass=15 --highpass=0 --planereg --bin=4 --diam=570 --pixlimit=4.0 --pickrunid=18 --shape=circle --shapesize=66 --label=templ88 --expId=9749 --jobtype=manualpicker

... Time stamp: 12apr10m31
 ... Function name: manualpicker
 ... Appion directory: /ami/sw/packages/myamitrunk/appion
!!! WARNING: Using split database
Traceback (most recent call last):
  File "/ami/sw/packages/myamitrunk/appion/bin/manualpicker.py", line 656, in ?
    imgLoop = ManualPicker()
  File "/ami/sw/packages/myamitrunk/appion/appionlib/particleLoop2.py", line 95, in init
    appionLoop2.AppionLoop.__init__(self)
  File "/ami/sw/packages/myamitrunk/appion/appionlib/appionLoop2.py", line 30, in init
    appionScript.AppionScript.__init__(self)
  File "/ami/sw/packages/myamitrunk/appion/appionlib/appionScript.py", line 68, in init
    newdbname = apProject.getAppionDBFromProjectId(self.params['projectid'])
  File "/ami/sw/packages/myamitrunk/appion/appionlib/apProject.py", line 81, in getAppionDBFromProjectId
    projdata = leginon.projectdata.projects.direct_query(projectid)
  File "/ami/sw/packages/myamitrunk/sinedon/data.py", line 427, in direct_query
    db = connections.getConnection(modulename)
  File "/ami/sw/packages/myamitrunk/sinedon/connections.py", line 21, in getConnection
    dbconf = dbconfig.getConfig(modulename)
  File "/ami/sw/packages/myamitrunk/sinedon/dbconfig.py", line 61, in getConfig
    return dict(configs[modulename])
KeyError: 'projectdata'
Exception exceptions.KeyError: 'appiondata' in &lt;bound method ManualPicker.__del__ of &lt;__main__.ManualPicker object at 0x1139a750&gt;> ignored
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 #1

Updated by Amber Herold over 12 years ago

Hey Becca,
I tried running manpicker on amibox03 and it worked for my project. Looks like I don't have permissions to open your log file so can't try yours without changing file permissions. Looks like something is askew with a database lookup. I have to leave now, but can take a look into it tomorrow.

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 #2

Updated by Amber Herold over 10 years ago

  • Status changed from New to Won't Fix or Won't Do
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