Appion

Here is my output running check.sh per instructions here: http://emg.nysbc.org/projects/appion/wiki/Test_Appion. I know not to worry about Eman, chimera and matlab. What about the DD errors?

[ami@cb-demo03 appion]$ sudo ./check.sh

Trying to import all libraries
----------------
... apAgent
Warning: No module named dbconfig, status updates will be disabled
... apAlignment
... apAmpCorrect
... apBeamTilt
... apBoxer
... apChimera
... apChimSnapshot
Failed to import chimera modules
... apConvexHull
... apCoranPlot
... apCorrelate
... apCrud
... apCtf
... apDatabase
... apDDprocess
Traceback (most recent call last):
  File "./importer.py", line 30, in ?
    from appionlib import apDDprocess
  File "/usr/local/myami/appion/appionlib/apDDprocess.py", line 18, in ?
    from leginon import correctorclient
  File "/usr/lib/python2.4/site-packages/leginon/correctorclient.py", line 19, in ?
    import leginon.session
  File "/usr/lib/python2.4/site-packages/leginon/session.py", line 14, in ?
    projectdata = leginon.project.ProjectData()
  File "/usr/lib/python2.4/site-packages/leginon/project.py", line 36, in __init__
    raise NotConnectedError(e)
leginon.project.NotConnectedError: (1045, "Access denied for user 'usr_object'@'localhost' (using password: NO)")
----------------

Trying to import all binaries
----------------
... affinityPropCluster
... affPropSubClassify
... alignDefocalPairs
... alignModels
... alignSubStack
... apChimAlign
... apdbconfig
... ApDogPicker
... apmqRefine
... ApTiltAutoPicker
... ApTiltPickerHelical
... ApTiltPicker
... assembleBestCTFImages
... bootstrappedAngularReconstitution
... boxMaskStack
... ccStack
... centerParticleStack
... cleanRecon
... clstoaligned
EMAN module did not get imported
... clusterCoran
... combinestack
... contouranalysis
... contourpicker
... contourpickerTextFileGenerator
... contourpickerTubeCircleTextFileGenerator
... convert2Dto1D
... coranClassify
... coran_for_cls
EMAN module did not get imported
... coranSubStack
... countparticles
... createFakeStack
... createModel
... createSyntheticDataset
... ctfCorrector
!!! WARNING: Matlab module did not get imported
Matlab module did not get imported
... ctfestimate
... dbconfig
... dbStackDownload
... dbStackUpload
... dogPicker
... edCenterStack
... edIterAlign
... emanRefine2d
... equalViewsSubStack
... etomo_recon
... etomo_samplerecon
... fakeTwoStacks
... flattenSolvent
... focalPairSync
... frealignParamStats
... getProjEulers
EMAN module did not get imported
... getRes
... hideRejects
... hideSquare
... hippostProc
... HIP
... imageloader
... imagic3dRefine
... imagicMSAcluster
... imagicMSA
... imagicMultiReferenceAlignment
... imgRejector
... imod_wbprecon
... importer
... affinityPropCluster
... affPropSubClassify
... alignDefocalPairs
... alignModels
... alignSubStack
... apChimAlign
... apdbconfig
... ApDogPicker
... apmqRefine
... ApTiltAutoPicker
... ApTiltPickerHelical
... ApTiltPicker
... assembleBestCTFImages
... bootstrappedAngularReconstitution
... boxMaskStack
... ccStack
... centerParticleStack
... cleanRecon
... clstoaligned
... clusterCoran
... combinestack
... contouranalysis
... contourpicker
... contourpickerTextFileGenerator
... contourpickerTubeCircleTextFileGenerator
... convert2Dto1D
... coranClassify
... coran_for_cls
... coranSubStack
... countparticles
... createFakeStack
... createModel
... createSyntheticDataset
... ctfCorrector
... ctfestimate
... dbconfig
... dbStackDownload
... dbStackUpload
... dogPicker
... edCenterStack
... edIterAlign
... emanRefine2d
... equalViewsSubStack
... etomo_recon
... etomo_samplerecon
... fakeTwoStacks
... flattenSolvent
... focalPairSync
... frealignParamStats
... getProjEulers
... getRes
... hideRejects
... hideSquare
... hippostProc
... HIP
... imageloader
... imagic3dRefine
... imagicMSAcluster
... imagicMSA
... imagicMultiReferenceAlignment
... imgRejector
... imod_wbprecon
... importer
... jpgmaker
... jumperSubStack
... kerdenSOM
... makeDDParticleMovie
Traceback (most recent call last):
  File "./importer.py", line 128, in ?
    import importer
  File "/usr/local/myami/appion/bin/importer.py", line 136, in ?
    import makeDDParticleMovie
  File "/usr/local/myami/appion/bin/makeDDParticleMovie.py", line 9, in ?
    from appionlib import apDDprocess
  File "/usr/lib/python2.4/site-packages/appionlib/apDDprocess.py", line 18, in ?
    from leginon import correctorclient
  File "/usr/lib/python2.4/site-packages/leginon/correctorclient.py", line 19, in ?
    import leginon.session
  File "/usr/lib/python2.4/site-packages/leginon/session.py", line 14, in ?
    projectdata = leginon.project.ProjectData()
  File "/usr/lib/python2.4/site-packages/leginon/project.py", line 36, in __init__
    raise NotConnectedError(e)
leginon.project.NotConnectedError: (1045, "Access denied for user 'usr_object'@'localhost' (using password: NO)")
----------------

removed `bin/importer.py'
removed `importer.py'
[ami@cb-demo03 appion]$