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Bug #1803

closed

prepRefineForm.php loses modelid once an iteration is selected as initial orientation for frealign

Added by Anchi Cheng over 12 years ago. Updated about 9 years ago.

Status:
Closed
Priority:
Immediate
Assignee:
Category:
-
Target version:
Start date:
05/16/2012
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 2.2.0 (trunk)
Show in known bugs:
No
Workaround:

Description

Looks like model_1 post is lost in translation.

After model is selected:

$_POST=Array ( [submitstackmodel] => Use selected model(s) [model_] => model_1 [method] => frealign [type] => [stackval] => 53 )

After a reconstruction is selected:
Array ( [model_1] => 1 [stackval] => 53 [method] => frealign [jobtype] => preprefinefrealign [kv] => [apix] => [runname] => frealign_recon38 [outdir] => /data/appion/session/recon/ [description] => test [lastParticle] => [lowpass] => [highpass] => [bin] => [importrecon] => 53 [processinghost] => host.edu )

After an iteration is specified and click show command or submit:
Array ( [1] => [stackval] => 53 [method] => frealign [jobtype] => preprefinefrealign [kv] => [apix] => [runname] => frealign_recon38 [outdir] => /data/appion/session/recon/ [description] => test [lastParticle] => [lowpass] => [highpass] => [bin] => [importrecon] => 53 [reconiterid] => 177 [process] => Just Show Command [processinghost] => host.edu )

Actions #1

Updated by Anchi Cheng over 12 years ago

--reconiterid is also not found in the command constructed.

Actions #2

Updated by Anchi Cheng over 12 years ago

correction, --reconiterid only show up if the checkbox is selected to use recon orientation as start. Seems that it should be automatic if a recon is selected. But that is minor.

Actions #3

Updated by Anchi Cheng over 12 years ago

  • Priority changed from Normal to Immediate

Do you want to fix this for 2.2 or hide Refine Frealign all together? It can't be run without the modelid. Priority is Immediate just for a decision.

Actions #4

Updated by Amber Herold over 12 years ago

I will look at this monday.Could be a problem with other refines as well.

Actions #5

Updated by Amber Herold over 12 years ago

  • Status changed from Assigned to In Code Review
  • Assignee changed from Amber Herold to Anchi Cheng
  • Target version set to Appion/Leginon 2.2.0

Already merged

Actions #6

Updated by Anchi Cheng about 9 years ago

  • Status changed from In Code Review to Closed
Actions

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