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Bug #2056
closedCan't run single-model refinements.
Status:
Closed
Priority:
Normal
Assignee:
Amber Herold
Category:
-
Target version:
-
Start date:
09/19/2012
Due date:
% Done:
0%
Estimated time:
Affected Version:
Appion/Leginon 2.1.0
Show in known bugs:
No
Workaround:
Description
I can't get single-model refinements to work on cronus3/beta or either longboard. (xmipp, eman1, eman2, and relion)
This might be the error:
warnings.warn("Failed to import %s" % module_function)/opt/myami-2.2/lib/pyami/tifffile.py:903: UserWarning: Failed to import _tifffile.decodepackbits
/opt/myami-2.2/lib/pyami/tifffile.py:903: UserWarning: Failed to import _tifffile.decodelzw
warnings.warn("Failed to import %s" % module_function)
This is the directory with all of the failed jobs: /ami/data00/appion/12jul16a/recon
thanks!
Updated by Amber Herold over 12 years ago
I can look into this in the morning Melody.
Updated by Amber Herold over 12 years ago
Melody, it looks like the refinements are trying to run in the 2.2 installation rather than the trunk. Best bet is to go from cronus3/betamyamiweb and run on guppy. Make sure the path in front of runJob.py is /opt/myamisnap/bin/appion.
Updated by Melody Campbell over 12 years ago
awesome, thanks amber, i'll tell you how this goes when i run it.
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