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Bug #2277

closed

Quote characters are not handled well in the description for makestack

Added by Jeff Speir almost 12 years ago. Updated about 11 years ago.

Status:
Closed
Priority:
Normal
Assignee:
Anchi Cheng
Category:
-
Target version:
Appion/Leginon 3.0.0
Start date:
02/28/2013
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 2.1.0
Show in known bugs:
No
Workaround:

Description

NRAMM visitor reports missing stacks in external server project (?)

emportal session 12oct30b - Cys mms3 homo (Weidenheft - CRISPR)

Appion reports 16 stacks, but only 9 are viewable. Confirmed by Amber 2/28/13.

Are there actually 16 stacks?....

From: MaryClare Rollins <>
Date: February 28, 2013 10:38:02 AM PST
To: Jeff Speir <>
Subject: trouble viewing stacks

Hi, Jeff-

I recently used the stack creation option in the Appion suite to generate some new stacks. According to Appion, I now have 16 stacks completed, but when I open the hierarchical stack summary page, I can't see all of them. The most recent stack I can see was created on 8 Feb 2013. Is there a limit to the number of stacks that can be displayed? How can I access my most recent stacks?

Thank you for your help. Hope all's well-

MaryClare Rollins
Montana State University
Wiedenheft Lab
406.994.5003

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 #1

Updated by Amber Herold almost 12 years ago

  • Tracker changed from Support to Bug
  • Project changed from 5 to Appion
  • Status changed from New to Assigned
  • Priority changed from High to Normal
  • Affected Version set to Appion/Leginon 2.1.0
  • Show in known bugs set to No
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 #2

Updated by Amber Herold almost 12 years ago

  • Subject changed from NRAMM visitor reports missing stacks in external server project (?) to Quote characters are not handled well in the description for makestack

This occurred because there was a ' in the description of the job.

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 #3

Updated by Amber Herold almost 12 years ago

  • Status changed from Assigned to In Code Review
  • Assignee changed from Amber Herold to Anchi Cheng
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 #4

Updated by Amber Herold almost 12 years ago

Anyone can test.
1. go to the makestack web page
2. enter a quote char in the description(' or ")
3. press just show command
4. Error message should be displayed

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 #5

Updated by Anchi Cheng about 11 years ago

  • Status changed from In Code Review to Closed
  • Target version set to Appion/Leginon 3.0.0

reviewed and tested

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