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Bug #2279

closed

Error on RCT volume reconstruction

Added by Julia Luciano over 11 years ago. Updated over 11 years ago.

Status:
Closed
Priority:
Normal
Assignee:
Julia Luciano
Category:
-
Target version:
-
Start date:
03/04/2013
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 2.1.0
Show in known bugs:
No
Workaround:

Description

Hi there

I am unable to create RCT volumes from my 2D classes, regardless of the number of classes I use.
It looks like it is a release/code update problem.
Please see attachment for details.

Many Thanks

Files

Screen_shot_2013-03-04_at_11.01.49_AM.png (106 KB) Screen_shot_2013-03-04_at_11.01.49_AM.png Julia Luciano, 03/04/2013 08:25 AM
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 #1

Updated by Amber Herold over 11 years ago

Thanks Julia,
I may not be able to look into this until tomorrow.

Anchi, Jim, do you know what causes the "NameError: name "LeginonConfigError" is not defined" message. If not, I'll check tomorrow.

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 #2

Updated by Amber Herold over 11 years ago

  • Status changed from New to In Test
  • Assignee set to Julia Luciano

Ok Julia,
There are older versions of appion also installed on the machine, so it was trying to use an old version of some of the files.

When running via the command line, you should always prefix any Appion commands with "/opt/myami-2.2/bin/appion " to ensure the proper version is running. So it should look like:

/opt/myami-2.2/bin/appion rctVolume.py .....

We are removing older installations now, but give it a try with the prefix.

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 #3

Updated by Julia Luciano over 11 years ago

  • Status changed from In Test to Closed

great!
Thanks

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