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Feature #2497
closedModify black area intensity of the image before template correlation in JAHCFinder
Status:
Closed
Priority:
Normal
Assignee:
Category:
Leginon subsystem
Target version:
Start date:
08/29/2013
Due date:
% Done:
0%
Estimated time:
Deliverable:
Description
Correlation tends to be stronger when there is an edge. When there are chunks of thick ice or edge of the grid bar in the image, the correlation peaks from them often over shadow the ones we are really looking for.
This feature is an optional entry in Template step of JAHCFinder (The holefinder used in MSI-T). User defines a threshold to mask regions of the image and fill them with the mean of the non-masked area. The proper value needs to be determined by the user since it depends on the imaging condition.
Updated by Anchi Cheng over 11 years ago
- Subject changed from Thresholding image before template correlation in JAHCFinder to Modify black area intensity of the image before template correlation in JAHCFinder
- Status changed from Assigned to In Code Review
- Assignee changed from Anchi Cheng to Jim Pulokas
Assign Dmitry to test. I think he will like this.
Updated by Anchi Cheng about 11 years ago
- Status changed from In Code Review to In Test
- Assignee changed from Jim Pulokas to Dmitry Lyumkis
- Target version changed from Appion/Leginon 3.0.0 to myami-3.0
See if this helps you making perfect hole finding.
Updated by Anchi Cheng about 7 years ago
- Status changed from In Test to Closed
fixed setting default for the new parameter
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