Electron Microscopy Group

02/01/2017

07:25 PM Appion Bug #4746: motionCor2 error when dose weighting mode is on but no dose

Thanks for looking into this, Anchi. Dmitry Lyumkis

10/29/2016

11:07 AM Appion Feature #4512: Add MotionCor2 from UCSF to appion

The program was giving me errors about not being able to find a file, which was named without the gpuid. I thought th... Dmitry Lyumkis

10/26/2016

05:46 PM Appion Feature #4512: Add MotionCor2 from UCSF to appion

correction: the MotionCor2 distribution that I'm using is coming from Appion's distribution, updated 9/19, not the re... Dmitry Lyumkis

05:17 PM Appion Feature #4512: Add MotionCor2 from UCSF to appion

A couple things.
First, I was able to fix some of the gain issues with the latest MotionCor2 binary (updated on A... Dmitry Lyumkis

10/25/2016

01:49 PM Appion Feature #4512: Add MotionCor2 from UCSF to appion

Anchi,
We're reprocessing old data, and notice that the gains are now applied internally in MotionCor2. This is cau... Dmitry Lyumkis

10/13/2016

12:44 PM Appion Bug #4337: cannot submit job, diffs in login.inc

We did several things:
First, there were new python dependencies, h5py, for job submission that Donnie committed,... Dmitry Lyumkis

08/25/2016

12:03 PM Appion Bug #4337: cannot submit job, diffs in login.inc

Sargis, no luck with myami-beta. Dmitry Lyumkis

08/24/2016

06:52 PM Appion Bug #4337: cannot submit job, diffs in login.inc

Anchi, you guys have no problems submitting jobs from the web? I cannot seem to get this to work on our end, even for... Dmitry Lyumkis

08/20/2016

05:32 PM Appion Task #4379: break up apDDprocess.py to separate camera selection and alignment program selection

added scripts for motioncorr2, early commits don't reference this issue number, frame aligner with options:
makeD... Dmitry Lyumkis

08/06/2016

09:11 PM TiltPicker Revision 19948: relion star maker

Dmitry Lyumkis