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Bug #2569

closed

CTF - ctffind3 not finding all en images for processing

Added by Jeff Speir about 11 years ago. Updated about 11 years ago.

Status:
Closed
Priority:
Normal
Assignee:
Category:
-
Target version:
-
Start date:
10/25/2013
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 3.0.0
Show in known bugs:
No
Workaround:

Description

Session 13oct23h - data set was already collected with 640 en images active. When I started the ctffind3 job to do the CTF corrections, the database query only found 178 en images and didn't process the rest. Here is excerpt from log file:

speir@guppy:/ami/data15/appion/13oct23h/ctf/ctffindrun1 <80> more ctffindrun1.appionsub.log
... Time stamp: 13oct23o54
... Function name: ctfestimate
... Appion directory: /opt/myamisnap/lib
... Using split database
Connected to database: 'ap388'
... Committing data to database
... Looking up session, 13oct23h
... Found project id=388 for session 13oct23h in 5.7 msec
... Run directory: /ami/data15/appion/13oct23h/ctf/ctffindrun1
!!! WARNING: directory '/ami/data15/appion/13oct23h/ctf/ctffindrun1' already exists.
... Writing function log to: ctfestimate.log
... Running on host: guppy-29
... Uploading ScriptData....
... Running on host: guppy-29
... Found 4 processors on this machine
... Running Appion version 'trunk'
... Creating new done dictionary: ctfestimate.donedict
... Querying database for preset 'en' images from session '13oct23h' ...
... Found 178 images in 38.59 sec
... Remove processed images
.................
... Process images old to new
... Running program ctffind64.exe

Beginning Main Loop

---------
Is this a bug or did I do something wrong?

Thanks -- Jeff

Actions #1

Updated by Jeff Speir about 11 years ago

  • Status changed from New to Closed

My bad - I started the CTF fun before all the images were actually collected. Everything is fine (except my memory).

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