Bug #2670
closed
DM 2.30 image orientation change when saving frames
Added by Anchi Cheng over 10 years ago.
Updated about 7 years ago.
Affected Version:
Appion/Leginon 3.0.0
Description
The definition of height and width as input to DM through DMSEM has reversed for the Leignon orientation. This causes the returned image cropped and normalization failed.
- Status changed from Assigned to In Test
r18117 changes pyscope/dmsem.py to deal with this. For those with 2.30 version of DM, you should apply this fix through on of the two options:
r18118 merges this and other changes since r18105 to 3.0 branch.
1. download current version of pyscope/dmsem.py from this page http://emg.nysbc.org/projects/leginon/repository/annotate/trunk/pyscope/dmsem.py
and use it to replace the one in your k2 computer install at C:\Python27\Lib\site-packages\pyscope\dmsem.py
2. do the full update of the processing server on both instruments and linux box. There are a few other bug fixes that may help you in RCT and skipping focusing when queuing but not as critical as this one.
Forgot one step.
The modification for DM 2.30 is not default in dmsem.py. To activate it, please change the line
isDM230 = False
to
isDM230 = True
- Status changed from In Test to Closed
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