Appion

I have a bug at FSU where I am not using a queuing system to launch jobs. In other words, I always use the just show command option in Appion. When I do this with XMIPP maxlike align jobs, I get an error that Xmipp does not run. I traced this down to an mpirun option. Locally, I change the line:

mpiruncmd = mpirun+" -np "+str(nproc)+" "+xmippexe+" "+xmippopts

to

mpiruncmd = mpirun+" -np "+str(nproc)+" -H localhost "+xmippexe+" "+xmippopts ### Stagg hack to get mpi working at FSU HPC

I'm not sure of the best way to get "Just show command" to work with maxlikeAlignment.py other than hacking it locally.