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Feature #2995

closed

Scripts to help user change the session and appion run path

Added by Anchi Cheng over 9 years ago. Updated about 8 years ago.

Status:
Closed
Priority:
Normal
Assignee:
Anchi Cheng
Category:
-
Target version:
Appion/Leginon 3.2
Start date:
12/11/2014
Due date:
% Done:

0%

Estimated time:

Description

This is often requested since data needs to be moved sometime.

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 #1

Updated by Anchi Cheng over 9 years ago

r18710 is the one for one leginon session.

get help with

python session_path_change.py

r18751 is the one for a single appion run.

python appion_path_change.py

This one needs the old path as well since a session usually have multiple runs of different things.

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 #2

Updated by Anchi Cheng over 8 years ago

  • Status changed from Assigned to Closed

r19327 changes multiple appion run pathes with the same parent directory

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 #3

Updated by Anchi Cheng over 8 years ago

  • Target version set to Appion/Leginon 3.2
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 #4

Updated by Anchi Cheng over 8 years ago

  • Subject changed from Script to help user change the session and appion run path to Scripts to help user change the session and appion run path

Run these in the same environment leginon and appion can run (i.e. has sinedon, appionlib, and sinedon.cfg).

For example,

batch_appion_path_change.py 15nov10a /data1/appion/username /data2/appion/username

change the database record of all rundir starts with /data1/appion/username/15nov10a.
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 #5

Updated by Anchi Cheng about 8 years ago

r19686 adds the option to change frame path. Run in the similar way.

python session_path_change.py sessionname full_new_frame_path frame

full_new_frame_path should lead to the location of the frame files directly, such as /data/frames/session/rawdata.

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