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Bug #3408

open

xmippCtf error

Added by Anchi Cheng over 9 years ago. Updated over 9 years ago.

Status:
In Code Review
Priority:
Normal
Assignee:
Anchi Cheng
Category:
-
Target version:
-
Start date:
08/22/2015
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 3.2
Show in known bugs:
No
Workaround:

Description

Error from log:

!!! WARNING: no best CTF value for image 15aug18h_a_017gr_01sq_02hl_02en

Found 0 ctf values
Found 0 ctf values
Traceback (most recent call last):
File "/opt/myamisnap/bin/xmippCtf.py", line 268, in <module>
imgLoop.run()
File "/opt/myamisnap/lib/appionlib/appionLoop2.py", line 86, in run
results = self.loopProcessImage(imgdata)
File "/opt/myamisnap/lib/appionlib/appionLoop2.py", line 136, in loopProcessI
mage
return self.processImage(imgdata)
File "/opt/myamisnap/bin/xmippCtf.py", line 121, in processImage
nominal = (ctfvalue['defocus1']+ctfvalue['defocus2'])/2.0
TypeError: 'NoneType' object is unsubscriptable

Neil if this is not an easy fix, we should shut it down from user access.

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 #1

Updated by Neil Voss over 9 years ago

Hi Anchi, This is not the greatest program, so we could hide. I know Xmipp also has the FastDEF program. As implemented, it needs a previous CTF estimate to setup image parameters, but this could be changed by taking leginon nominal defocus and inputting a amplitude contrast.

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 #2

Updated by Neil Voss over 9 years ago

  • Status changed from New to In Code Review
  • Assignee changed from Neil Voss to Anchi Cheng
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