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Bug #3677

closed

why default runMaxLikeAlignment.php to 1 ?

Added by Anchi Cheng about 9 years ago. Updated almost 7 years ago.

Status:
Closed
Priority:
Normal
Assignee:
Anchi Cheng
Category:
-
Target version:
Appion - Appion/Leginon 3.2
Start date:
10/19/2015
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 3.2
Show in known bugs:
No
Workaround:

Description

r19231 changes the stable branch to use one processor for maxlmum likelyhood alignment. Doesn't this take way too long to be a reasonable default ?

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 #1

Updated by Neil Voss almost 9 years ago

  • Status changed from Assigned to Closed
  • Assignee deleted (Neil Voss)
  • Priority changed from Immediate to Normal
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 #2

Updated by Anchi Cheng almost 9 years ago

  • Description updated (diff)
  • Status changed from Closed to Assigned
  • Assignee set to Neil Voss

What is your answer ?

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 #3

Updated by Neil Voss almost 9 years ago

I sent you a separate email last year, it was because of docker and I thought you reverted it, because it was still 4 in docker.

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 #4

Updated by Neil Voss over 8 years ago

  • Assignee changed from Neil Voss to Anchi Cheng

Hi Anchi, Can you revert this back to 4 in the myami 3.2 branch?

$nproc = ($_POST['nproc']) ? $_POST['nproc'] : '1';

Should be

$nproc = ($_POST['nproc']) ? $_POST['nproc'] : '4';

Not sure the best way to set the default, because it is cluster specific, but everywhere else this is the '4'.

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 #5

Updated by Anchi Cheng over 8 years ago

Maybe the best is to default to None or empty string and add a validation and force users to think and set a reasonable value for their case. Not sure how to get it to interact with the process time estimate, though. What do you think ?

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 #6

Updated by Anchi Cheng almost 7 years ago

  • Status changed from Assigned to Closed

set to 4

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